Erigeron canadensis (horseweed): 122603244
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Entry
122603244 CDS
T07610
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122603244
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ecad01009
]
122603244
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122603244
Protein phosphatases and associated proteins [BR:
ecad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122603244
Spliceosome [BR:
ecad03041
]
Common components
Common spliceosomal components
SR proteins
122603244
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CoV_nucleocap
RRM_5
RRM_occluded
RRM_10
Motif
Other DBs
NCBI-GeneID:
122603244
NCBI-ProteinID:
XP_043631837
LinkDB
All DBs
Position
6:28881459..28884808
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AA seq
254 aa
AA seq
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MADSPRGRYSRSPSPQYEAPSRSRSRSRSRSRSWSRPPRGRPAARSRSRSRGREDEVVNP
GNTLYVTGLSTRVTQEQLEEHFSKEGKVVNCFLVVEPRSRISRGFAFITMDTLEDANRCI
KHLNQSVLEHRQITVERSRRKRARTPTPGHYLGLKNTRDTGYRGDRGGRYRGGSGRDDHG
YRRSPRRSPPPYRGGRDYSPPPRRSPPPYRGGGREYSPPPRRSPYHGGRSRRERTRSPPY
SPPYRSPERHYTRR
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctcctcgtggaaggtattcacgctctcctagtcctcagtatgaagcaccg
tccaggtcaaggtcaaggtctcgttctagatcgagatcctggtcaaggccgccgagaggc
aggcctgcagctagatctaggtccagaagtcgtggaagggaggacgaggttgtaaaccct
ggaaatacactttatgttacaggcctatctacacgtgttactcaagagcagcttgaagaa
catttttcaaaggagggaaaggtggtaaactgttttctggttgtggagcctcgttctcgc
atctcccgtggctttgctttcataacgatggatactcttgaagatgccaatcgctgcata
aagcatcttaatcagtcggttcttgaacatcgccaaataactgttgagaggtcacgaagg
aaacgtgccaggactccaacacccggccattacttaggcctgaaaaacaccagggacaca
ggctatcgtggtgatagaggaggcaggtatcgtggtggctctggacgggatgaccatgga
taccggagatctccaaggaggtcaccaccaccatatagaggtggtcgtgattactctcca
cctccaaggaggtccccaccaccatatagagggggtgggcgtgaatattcaccacctcct
agacgctcgccttatcatggtggcagatcaaggagggagcgaacaaggtctcctccatat
tctcctccttacagaagtcctgagagacactatactcgtcgctag
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