KEGG   Erigeron canadensis (horseweed): 122603509
Entry
122603509         CDS       T07610                                 
Name
(RefSeq) UBP1-associated protein 2B-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122603509
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122603509
   03041 Spliceosome [BR:ecad03041]
    122603509
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     122603509
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     122603509
Spliceosome [BR:ecad03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    122603509
SSDB
Motif
Pfam: RRM_1 RRM_7 Nup35_RRM_2
Other DBs
NCBI-GeneID: 122603509
NCBI-ProteinID: XP_043632165
LinkDB
Position
6:complement(25487958..25497078)
AA seq 647 aa
MVKAANKKLKTPKKPTNPTTPKKKPRKTKKKKPISKKPIITSSDSDSDSQQTTPDRIQKL
IEPYSKSQLIDFVISAALSNPSFYTRIRNYADTDVSNRKIFVYGLGWDTTRENLVQGFKP
YGEIEDCNVVIDRVTGKAKGFGFVQFKSRKSAFKALKNPKKRIGNRMVSCQLASLGPGKG
DGKGGTGNRDNWDRKIYVSNVRQDTDPAKLRVFFERFGEIETGPLGFDTSTGKSRGFALF
VYKNQDGLKKALEEPKKVFEGHQLHCQRASGGGKNKGDGGSGSSSGSGSGSGSGVGPVLQ
QPDPQMMAAVAASQNFGLYPMYGGFIAANAIYPPGVLGQIGGVPGGLGGYYAGAPVPHGL
GIGVDSASLLGATPPMMPGLGLQNAYPMKKSGPSSGSGSGSPSGSRSQGAGGGSYSRYSS
HKRLTTSNSPRSIKSPNTLEYTMEYPDPRLQPTKEGDSLKESYHLAEAVAQGFKAALPDF
VAQLTEVHKVRQTEDVVRPAASTNNDNGIKGKQKNRSKNQGGKSGKKRKQVRNLDKANPE
QEGYIGRHPICNRCSFHHLGDCLVCHGCKLPGHTIKYCKKTNVKDGRKIMACYECGSQDH
LRNLCPRLRKAPIYNESANTANYPNNPLTDVIIKVEPNDVVIKVEPQ
NT seq 1944 nt   +upstreamnt  +downstreamnt
atggtgaaagcagcaaacaaaaaactcaaaacccccaaaaaaccaaccaaccccaccacc
ccaaaaaagaaacccagaaaaaccaaaaagaaaaagcccatctcaaaaaaacctataatc
acatcttccgattcagattcagattcacaacaaacaacacctgaccgaatccaaaaacta
atcgaaccatattcaaaatcccagctaatagatttcgtaatttcagctgcactttcaaac
ccatcattctacactcgtattcgaaactacgcagataccgatgtttcgaatcgaaaaata
ttcgtctacgggttaggttgggatacaactagagaaaatttggttcaagggtttaaacca
tatggtgaaattgaggattgtaatgtagttattgatagggttactgggaaagctaaaggc
tttggctttgtacagtttaagtcaagaaaatcggcttttaaagcgttgaaaaacccgaaa
aagagaatcgggaataggatggtttcgtgtcagttagcgtctttagggcccggaaaaggg
gatggaaaagggggtacagggaatagggataattgggataggaagatttatgtgagtaat
gtgagacaggatactgatccggcgaaattgagagtgtttttcgagaggtttggagagatt
gagacgggtccgttagggtttgatacgagtacggggaaatctagagggtttgcgttgttt
gtgtataagaatcaggatgggttgaaaaaggcgttagaggaacctaagaaagtgtttgaa
gggcatcagttgcattgtcagagagcttctggtggtgggaagaataaaggggatgggggt
tcgggatcaagttcgggttcgggttcaggttcaggttcgggtgttgggccagttttgcag
cagccggatccgcagatgatggctgcagttgctgcaagtcagaattttgggttgtatcct
atgtatggtgggtttattgcagcgaatgcaatttatcctccaggggttttgggccaaata
ggtggtgttccgggtgggttaggtggttactatgccggtgcaccggtgccacatgggttg
ggtatcggtgttgatagtgcgtcattgttaggggctactcccccaatgatgccgggtttg
ggattgcaaaatgcatatcccatgaaaaaatcgggccctagctctggctctggttcaggt
tcaccttctggttcgaggtctcaaggtgccggtggtggctcatacagtcgttattcatct
cataagcgacttaccacgtcgaactctccgcgtagcattaaatcccccaacactttggaa
tatactatggaatatcccgaccctagacttcaaccgactaaagaaggtgactctttaaag
gaatcctaccacttagctgaagcggtagcacaaggttttaaagcagcattgccagatttt
gtcgcccaactaacagaggttcacaaagtccgccaaactgaagatgtggtaaggcctgcc
gcatcgaccaataatgataatggaattaaggggaaacaaaagaatcggtccaagaaccaa
ggtggcaaatcaggtaagaagcggaaacaagtaagaaaccttgacaaagcgaatccagag
caggagggatatattggacgacacccaatatgcaaccggtgtagtttccatcatctagga
gattgcctagtgtgccatgggtgcaagttgcccggtcataccatcaaatactgcaagaag
actaatgtgaaggatggtcgaaaaataatggcttgttatgagtgtggtagtcaagatcac
cttcgaaatttgtgcccgaggctgcgcaaagcaccaatctacaatgagtctgccaatact
gctaactaccctaataatcccttgactgacgtcatcataaaggttgaaccgaatgacgtc
gtcattaaggttgaaccacaatga

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