Erigeron canadensis (horseweed): 122605031
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Entry
122605031 CDS
T07610
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122605031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122605031
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122605031
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
122605031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
122605031
NCBI-ProteinID:
XP_043633835
LinkDB
All DBs
Position
6:complement(26213031..26216584)
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AA seq
287 aa
AA seq
DB search
MVGLSIGEKHFIQGGIAQDLRTDGRNRLTYRPIIVESGVIAQANGSARVKMGRTEVIASV
KAELGKPSSSAPDRGKVFIFIDCSPTAAPEFERRGGEELSTELSAALRQCLLGGKSGAGA
GINLSSLSIVDGKVCWDLYIDGLVISMDGNILDALGAAIKAALSNTGIPKVNVASAAPSD
EQPEVDVSDEEFLLFDTTAVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISINRQGLIC
GLTKRGGAGLDPSVIFDMISVAKHVSEQLMNKLDSEIAAAEAMEEES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtggggctatctataggagaaaaacattttatacaaggtggaattgctcaagacttg
cgtactgatggtcgtaataggttaacttaccgacccataattgtggaatccggagtcatt
gctcaagcaaatggttcagcaagagttaagatgggtagaacggaagtcatagctagcgtg
aaggccgagctaggaaaaccaagttcttcggcgcccgacagaggcaaagtttttatcttc
attgattgcagtcccacagcagcacccgagtttgagcggagaggtggtgaagaactttca
actgaactctctgcagctctaaggcaatgtcttttgggaggtaaatctggagcaggagct
ggaattaacctttcatctctgtcaattgtcgatgggaaggtctgttgggatttatatatc
gatggtcttgtgattagcatggatggaaatatactcgatgccttaggtgctgccatcaag
gctgctttaagcaatacgggtattccaaaagtcaatgttgcttcggctgccccttctgat
gaacaaccagaggttgacgtgagtgatgaagagtttctactattcgacaccactgcagtt
ccagttatcgtgactttaactaaggttggaaggcattatattgtagatgcaacttcagaa
gaggaatcacaaatgagctctgctgtctctatttcaatcaacaggcaaggattgatatgt
gggctgactaaaagagggggtgcaggtctagatccaagtgtcatttttgacatgatatcc
gtggctaaacatgtgagtgagcagttgatgaacaaattggactccgagatagctgcagct
gaggccatggaagaagagtcgtga
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