Erigeron canadensis (horseweed): 122607285
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Entry
122607285 CDS
T07610
Name
(RefSeq) WD repeat-containing protein PCN-like
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122607285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122607285
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122607285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
122607285
NCBI-ProteinID:
XP_043636160
LinkDB
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Position
7:complement(25380445..25386439)
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AA seq
802 aa
AA seq
DB search
MLKFYKCSSTSLQWNPSPIVALATSLDDSQVAAAREDGSLEIWLVSPGAVGWHCQLTIQG
DPNLRVSSLVWCGSGVGGLPAGRLFSSSIDGSISEWDLFNLTQKVVVDPIGVSIWQMATN
SLSKQQVNTKHALASIENGHATDSDSDITSDSEIEGGAHELYEGSITDSSCIAIACDDGC
VRLYNISDSDQFNYHKSLPRVSGRVLSVTWSPDSKMIYSGSSDGFIRCWDAKSSHEVYRI
TVGLGGLGGGSDLCVWSLLALRCGTLVSADSSGSVQFWDSLHGTLLQAHSCHKGDVNALA
ASPSHTRVFSAGSDGQIILYKLSGNATGSADDRSCLKAVKKWVYVGYVRAHTHDVRALVV
AVPISREDLLPDEKVKRARGTDKSIDFSYNKWAHTGIPMLISAGDDTKLFAYSANEFTKF
APHDICPAPQRPPVQLVCSTANKFAYLLLVQASHWLDIFTVNVKKDVSGPGGSVSTTDMV
ARVKSKGSRKIICSSFSSSGRFFAYSDHVRPCLFELKKNVVGKSVWSITKRKLPTSIPFA
HSMIFSSDSSRLMISGHDRMIYVVDVGSLELTHRFTPCRKETDEELPPTQPPITKMFTSL
DGQWLAAVNCFGDVYIFNLETQRQHWFISRLDGASVTAGGFSPRNSNVLIISTSSNQVYV
FDVDAKKLGEWSRHNTFILPRRYQDFPGEVIGLTFPPSTSSSSVIIYSSRAMCFIDFGMP
IGQDEDHEKVYSPLNGKLKRKLIGHEYDSKKGGRNFELCAFREPVLYIGHLSKGSVLVID
KPWLQVVKTFDAQPVHRHIYGS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttctacaaatgtagcagcacctcactccaatggaacccatccccgattgtc
gctttagccactagcctcgacgactctcaagtcgccgccgccagggaagacggctctctc
gaaatttggctcgtctcccctggtgctgttggctggcactgtcaactgacaatacagggt
gacccaaatttgagagtttcgtcgttggtatggtgtggttcgggtgtcggtgggttacct
gctgggaggctgttttcatcaagtattgatggatcaatttcagagtgggacttgtttaat
ttgactcaaaaggttgtggtggatcctatcggtgtatcaatctggcaaatggccactaat
tctttgagtaagcagcaggttaatacaaaacatgctttggcttctatagagaatggacat
gctactgatagcgatagtgatatcactagtgatagcgagattgaaggtggtgcacatgag
ttatatgaagggtcgatcactgatagttcatgtatagcaattgcttgtgatgatggttgt
gttcgattatacaatatctcagactcagatcagtttaattaccataaatcgctgccaagg
gtcagtggtcgtgtattaagtgttacttggagtccagattcaaagatgatatattctgga
agtagtgacgggtttataagatgctgggatgctaaatcgtctcatgaagtttatcgaatt
actgttggtcttggaggcttaggcggtggctctgatctttgtgtatggtctttacttgca
ctgaggtgcgggactcttgtgagtgcagatagtagtggcagtgtccaattttgggacagt
ttgcatggaactctcttgcaagcacattcttgccacaagggagacgtcaatgctctggcg
gctagtccaagccataccagggtattttctgctgggtcagatggccagattatattgtat
aagctttctgggaatgccacaggctctgcggatgatagatcatgtttgaaagcagttaaa
aaatgggtatatgttggttatgtgagagcccatacacatgatgttagagccttggttgtt
gctgtacccataagtcgtgaagatttactgcctgacgaaaaagtaaaaagagctcgtgga
acggataagtcaattgatttcagttacaataagtgggctcatacgggtatccctatgctt
atatcagctggtgatgacactaagctttttgcgtattcagccaatgagtttaccaaattt
gctcctcatgatatttgtcctgcaccacaaagaccacctgttcaattggtgtgcagtaca
gctaataagttcgcttatctgcttctggtccaggcttcacactggttagatatttttacg
gtcaatgtgaaaaaagatgtttccggcccaggtggcagtgtttcaactacagatatggtt
gctcgagttaaaagcaagggttcacggaagatcatttgcagctccttttcatcttctggg
aggttttttgcctactcggatcatgtgaggccttgcttatttgagttgaaaaagaatgtg
gtcgggaaaagtgtgtggtccataactaaaagaaaacttcctacatccataccatttgcc
cattccatgatctttagttccgattcatctcggttaatgatttctggacacgacagaatg
atatatgttgtggatgttggaagcctggaattaacacataggttcactccctgtcggaag
gaaactgatgaagaattgccacctactcagccgccgataacaaagatgtttactagtctt
gatggacagtggctagctgctgtcaactgctttggagatgtgtatatattcaatctagag
acacaaaggcaacactggtttatatcacgattggatggtgcctcggttactgctgggggg
tttagtcctcgaaatagcaatgtgctaataatctctacatcttcaaatcaagtgtatgta
tttgatgtggatgctaagaaattaggagaatggtctagacacaacacatttatcttgcca
cgaagatatcaggactttcctggagaggttattggactcacatttccgccatctacaagc
tcctcttctgtcatcatttacagttcccgggcaatgtgcttcattgactttggaatgccg
attggtcaagatgaagatcatgagaaggtatacagtccattaaatgggaaattaaaacgc
aagttgatagggcatgagtatgatagtaaaaagggtggtaggaattttgaactttgtgcg
tttagagaacctgttttatacattggccacctctcaaaaggttctgtattggtcatagac
aaaccatggttgcaagtggttaagacatttgatgcccagcctgttcacagacatatatac
gggtcataa
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