Enterobacter cancerogenus: CWI88_01180
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Entry
CWI88_01180 CDS
T05545
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ecan
Enterobacter cancerogenus
Pathway
ecan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CWI88_01180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecan03021
]
CWI88_01180 (rpoB)
03400 DNA repair and recombination proteins [BR:
ecan03400
]
CWI88_01180 (rpoB)
Enzymes [BR:
ecan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CWI88_01180 (rpoB)
Transcription machinery [BR:
ecan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CWI88_01180 (rpoB)
DNA repair and recombination proteins [BR:
ecan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CWI88_01180 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AUJ79738
UniProt:
A0AAN2ATT1
LinkDB
All DBs
Position
230791..234819
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDDIKLIEVPVEYIAGKVSAKD
YVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETIRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVAGGIEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQEEVAK
LREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLQ
LGGLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggacataccttatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaagggcagtacggcctggaagcagccttccgctccgtgttcccaattcag
agctacagcggtaattccgagctgcagtacgtcagctatcgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggtgaaatcccactcatgacggacaacggtactttcgttatcaacggt
actgagcgtgttatcgtttcccagctgcaccgtagcccgggcgtcttcttcgacagcgat
aaaggtaaaacacactcttccggtaaagtactgtataacgcacgcatcatcccttaccgt
ggttcatggctggactttgagttcgatccgaaagacaacctgtttgtccgtatcgaccgc
cgtcgtaaactgcctgcaaccatcatcctgcgtgcgctgcaatatacgactgaacagatc
ctggacctgttcttcgagaaagtgatctttgaaatccgcgacaacaagctgcagatggag
ctggtgccggaacgtctgcgtggtgagaccgcgtcgttcgacatcgaagccgacggcaaa
gtgtatgtggaaaaaggtcgccgtattactgcgcgccatattcgtcagctggaaaaagat
gatatcaaactcatcgaagtaccggttgaatacattgcaggaaaagtatccgcgaaagat
tacgttgacgagtcaactggcgagctgatctgcccggctaacatggagctgagcctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggtgcgtatatctctgagaccattcgcgtcgacccaacgaccgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccaccaactcgtgaagca
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctacgatctgtctgcggta
ggtcgtatgaagttcaaccgttctctgctgcgtgacgaaatcgaaggttccggaatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggcaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgca
gccgtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacccacaagcgtcgtatctctgcactcggcccaggcggtctgacccgt
gaacgtgcaggcttcgaagttcgagacgtacacccgacgcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatacggtttcctcgagactccgtaccgtaaagtgactgacggtgttgtaacc
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctcgttacctgtcgtagcaaaggc
gaatccagcctgttcagccgtgaccaggttgactacatggacgtttccacccagcaggtg
gtctccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccaacgctgcgcgctgataagccgctggtt
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaactgcggttgctaaacgt
ggcggtaccgtacagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccatgcgtgtctctgggtgagccagttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggttacaacttcgaagactccatcctcgtctccgag
cgtgtggttcaggaagatcgtttcaccaccatccacattcaggaactggcgtgtgtgtcc
cgtgacaccaagctggggccagaagagatcaccgctgacatccctaacgtgggtgaagct
gcgctctccaagctggatgaatccggtattgtttacatcggtgcggaagtgaccggcggc
gacattctggttggtaaggttacgccaaaaggtgaaacccagctgacgccagaagaaaaa
ctgctgcgtgcaatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggtgtatccggtacggttatcgacgttcaggtcttcactcgtgatggcgttgaa
aaagataaacgtgcgctggaaatcgaagagatgcagctcaagcaggcgaaaaaagacctg
tctgaagaactgcagatcctcgaagcaggtctgttcagccgtatctatgcggtactcgtt
gccggtggcatcgaagctgagaagctcgacaaactgccacgcgatcgctggctggaactg
ggcctgaccgacgaagagaaacagaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgcaaaatcactcagggcgac
gatctggcaccaggcgtgctgaagattgttaaggtgtatctggccgttaaacgtcagatc
cagcctggtgataagatggcaggtcgtcacggtaacaagggtgttatttctaagatcaac
ccgatcgaagatatgccgcacgatgctaacggtacgccggtagatatcgtactgaaccca
ttgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcaaaaggtatcggcgacaagatcaacgccatgctgaagcagcaggaagaagtcgcgaaa
ctgcgcgaattcatccagcgtgcctacgatctgggtaccgacgttcgtcagaaagtcgac
ctgaataccttcagcgatgacgaagtgctgcgtctggcagagaacctgcgcaaaggtatg
ccgattgcaacgccggtattcgacggtgcaaaagaagctgaaatcaaagagctgctgcaa
ctgggtggtctgccaacgtctggtcagattacgctgtttgacggccgtactggtgaacag
ttcgagcgtccggtaaccgtaggttacatgtacatgctgaaactgaaccacctggtcgac
gacaagatgcacgctcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tacggcgcagcatacaccctgcaggaaatgcttaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca
gaatccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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