Enterobacter chengduensis: FY206_10080
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Entry
FY206_10080 CDS
T06229
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
echg
Enterobacter chengduensis
Pathway
echg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
echg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FY206_10080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
echg03400
]
FY206_10080
Enzymes [BR:
echg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FY206_10080
DNA repair and recombination proteins [BR:
echg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FY206_10080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEL35741
UniProt:
A0A5C1BZ03
LinkDB
All DBs
Position
complement(2044630..2048076)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQSDVKW
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKQENELEEIKVELIDRFGLLPDAARNLLDIARLRQQAQKLGIRRLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagctgggc
gaactcaccggcgcggcatgcgccacgctggtggcggaaatcgccgagcgtcatccaggc
ccggtgatcctggttgccccggatatgcaaaacgccctgcgcctgcacgacgaaatccgc
cagttcaccgatagcctggtgttcagcctggccgactgggaaacgctgccgtatgacagc
ttctcgccgcaccaggagatcatctcctcgcgcctgtcgacgctttaccagctgccgacc
atgcagcgcggcgtgttgattgtgccggtaaacaccctgatgcagcgcgtctgtccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctgtcccgcgatgcc
ctgcgcgcacagcttgacggtgcgggctatcgccatgtcgatcaggtgatggagcacggg
gaatacgcgacccgcggcgcgctgctagacctttatccgatgggcagcgaccagccgtat
cgtctggacttcttcgatgacgaaatcgacagcctgcgcgtattcgacgccgacacgcag
cgcacgctggaggaagtagagtccattaacttactgcccgcgcatgagttccctacggac
aaaaccgctattgaactgttccgcagccagtggcgcgataagttcgaggtcaagcgcgac
gcggaacatatttaccagcaggtcagcaaagggacgcttcctgccgggatcgaatactgg
cagccgctgttctttaacgagccgctgcccgccctgttcagctacttcccggcgaacacg
ctgattgtgaacaccggcgacatcgacgccagcgccagccgctttgaaagcgaaacccgc
gcgcgcttcgaaaaccggggcgttgatccgatgcgcccactgctgccgccggaagcgctg
tggctgcgcaccgacgagctcaacgccgagctgaagcgctggccgcgcatgcagctgaaa
accgattcgctcgccgataaggccgccaataccaacctcgccttccggacgctgccggac
ctggccgttcaggcgcagcagaaatccccgctggataatctgcgcaagttcctggagtca
tttactgggccagtagtgttctcggttgagagtgaaggccgccgcgaagcattaggtgag
ctgctgggacgcattaaggtggcgccgaagcgcatcctgcgcctgagcgaagcgaccgga
aacggtcgttacctgatgattggcgccgccgaacacgggtttattgatacgctcaacaac
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgtcgtcgtcaggac
agccgtcgcaccatcaacccggacacgctgatccgtaacctggccgagctgcatccgggc
cagccgattgttcacctggagcatggcgttgggcgctatcagggaatgaccacgctggaa
gcgggcggcatcaagggtgaatacctgatgctgacctacgccaacgacgccaaactgtat
gtcccggtgtcgtccctgcatctgatcagccgctacgcgggcggtgccgaagagaacgcg
ccgctgcacaagctgggcggcgacgcctgggcgcgcgcgcgccagaaggccgcggaaaaa
gtgcgcgacgtggcggccgaactgctggatatctacgcccagcgcgcggccaaagagggc
ttcgcctttaagcatgataaagagcagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggaccaggctcaggctattaacgccgtgctgagcgacatgtgccagccgctg
gcaatggaccgcttagtctgcggcgacgtcggcttcggtaagaccgaagtggcaatgcgc
gccgccttcctggcggtggaaaacaacaagcaggtggcggtactggtgccgactaccctg
ctcgcccagcagcacttcgacaacttccgcgaccgcttcgccaactggccggtgcgcatc
gagatgctgtcgcgttttcgcagcgccaaagagcagacgcagatcctcgaacaggccagc
gaaggcaaaatcgatattctgatcggcacccataagctgctgcaaagcgacgtgaagtgg
aaagatctggggctgctgatcgtcgatgaagagcaccgcttcggggtacgccataaagaa
cgcatcaaagcgatgcgcgccgacgtcgatatcctgaccctgaccgccacgccaatcccg
cgaaccctgaacatggcgatgagcggcatgcgcgatctgtcgattattgccacgccgccg
gcgcgccgcctggcggtgaaaacctttgtccgcgagtacgataacctggtagtgcgcgag
gcgatcctgcgtgaagtgctgcgcgggggtcaggtctattacctctacaacgacgtggaa
aacatccagaaagccgccgacaggctggcggagctggtgccggaagcgcgcattgcgatc
ggccacgggcagatgcgcgagcgcgagctggaacgggtaatgaacgacttccaccaccag
cgctttaacgtgctggtgtgcactaccatcatcgaaaccgggatcgacattccgacggcg
aacaccatcatcattgaacgcgcggatcactttggtctggcgcagcttcaccagctccgc
ggccgcgtcgggcgttcgcaccatcaggcctacgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgcctggaggccatcgcctcgctggaagacctcggc
gcaggcttcgcgctggccacgcacgatcttgagatccgcggggccggcgagctgctgggt
gaagaccagagcggctccatggagaccatcggcttctcgctctatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaggatctcaccagccag
cagaccgaggtcgaattgcgtatgccttccctgctgccggacgatttcattccggacgtg
aatacccgactgtcgttctacaagcgcatcgccagcgcgaagcaggagaacgagctggaa
gagattaaggtggagctgatcgaccgcttcggtctgctgcctgatgcggcaagaaatttg
ctggatatcgcgcgcctgcgccagcaggcgcaaaagcttgggatccgcaggctcgaaggc
aatgaaaaaggcggggtgattgaattcgccgagaagaatcacgtcaacccgatgtggctg
atcggcctgctgcaaaaacagccgcagcatttccgtctggatggcccaacccgtctcaaa
tttacccaggagctgacggagcgcaaaacccgtatggactgggtgcgtaactttatgcgg
cagctggaagagaacgcgatcgcataa
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