Echinicola soli: FKX85_01285
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Entry
FKX85_01285 CDS
T06084
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
echi
Echinicola soli
Pathway
echi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FKX85_01285 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
echi03021
]
FKX85_01285 (rpoB)
03400 DNA repair and recombination proteins [BR:
echi03400
]
FKX85_01285 (rpoB)
Enzymes [BR:
echi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FKX85_01285 (rpoB)
Transcription machinery [BR:
echi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FKX85_01285 (rpoB)
DNA repair and recombination proteins [BR:
echi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FKX85_01285 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Terpene_synth
Motif
Other DBs
NCBI-ProteinID:
QDH77751
UniProt:
A0A514CD51
LinkDB
All DBs
Position
complement(266089..269964)
Genome browser
AA seq
1291 aa
AA seq
DB search
MAIQNQTERKSFSSIKVVKDYPDFLDIQLQSFKDFFQLDTPAEKRRQDGLFKVFSENFPI
SDSRENFTLEFIDYTVDPPKYSVGECIDRGLTYSVPLKAKLRLLCSDEDNEDFETIEQEV
FLGNLPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKFPVTTLLRAIGYGSDKAILDLFGLSEEIEANKSNLKKIVGRK
LAARVLKTWVEDFVDEDTGEVVSIDRNEVLLERDSVLTDEDIELILDSGAKSVILHRDDV
NIADYSIIYNTLQKDNSNSEKEAVEVIYRQLRNTEAPDEATAREVIHGLFFSDKRYDLGE
VGRYRINKKLGLDIEAEKIVLTTEDIINIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQ
LYSQFGVGLARMARTIRERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAELTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KVNSMGFLETPYRKVKAGKAGMKTEDIVFLTAEEEDNNNIAQANAPLEADGSFVNDRVKA
RYEGDFPVLEPKEISYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAE
SPIVGTGLEAKAAVDSRSLIIAEADGVVDFVDAKKIVIKYDLSDDELLVNFSDEYKAYDL
IKFRRTNQDTTINLTPLVLKGQRVTKGQVLVEGYSTNQGELALGKNLKVAYMPWQGYNFE
DAIVISERVVREDIFTSIHVEEFQLEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRI
GAELKEGDIIIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIETKL
FSRPKKDKDLRAKAKAEVEKLKQTYTKELLGVRAKMINKLVSILEGMTSLGVKHKFGDEI
ISKGVKFNHQNIENNLFPAKNPYRDESNYNVPEEANLISDIILDDWTEDEHTNSLIQQLV
KNYTNTRNEISGRFKRDRFTLEVGDELPAGIVRLAKVYVAKKRKLKVGDKMAGRHGNKGI
VAKIVRDEDMPFLEDGTPMDIVLNPLGVPSRMNIGQIFETVLAWAGQKLNKKYATPIFDG
ATTEEVAAELDLAGLPSFGRTYLYDGLTGKQFDQPVTVGIAYMLKLGHLVDDKMHARSIG
PYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTVKSDDVIGRAKAYESIV
KGENLPKPNIPESFNVLVHELRGLALEITLD
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttggctatccagaatcaaaccgaaaggaaaagtttctcatctattaaggtggtcaaagac
tatccggatttcctcgacatccagttacaatcattcaaagattttttccaattggatact
cccgctgaaaagaggagacaggatgggcttttcaaggtgttctctgagaacttcccaata
agtgactcgagagaaaacttcacacttgaatttattgattataccgtagatccgcctaaa
tatagtgtgggtgaatgtattgacagagggttgacttactctgttccattgaaggcaaag
cttcgcttgttgtgctctgatgaggacaatgaagattttgaaacaatagaacaggaagta
ttcttgggaaaccttccgtatatgaccgagaaaggctcttttgtcattaacggcgcggaa
agggtaattgtatcccagcttcataggtctccaggggtgttctttgcgcaaagtaaacac
acaaacggtaccaagctgtattctgccaggattattcctttcaaaggatcttggatagaa
ttcgctacggatatcaacaatgtcatgtatgcctacattgacagaaagaagaaattccca
gttaccactcttttgagagctattggttatggttcggataaagctatcttggatctattt
gggctgtcagaggaaattgaagccaataagtccaaccttaagaaaattgtcggtagaaaa
ctagccgcccgtgttttgaaaacttgggtggaagactttgtagatgaggataccggggaa
gtagtttctattgaccgaaacgaagtattgttggagagggattctgtgctgaccgatgag
gatatcgaattgatccttgattcaggtgccaagagtgtgatccttcaccgtgatgatgta
aacatcgctgattattccatcatctataatacacttcagaaagacaattccaactcggag
aaagaagcagttgaggtaatctaccgccagttgcgtaatacagaggctccagatgaggcc
actgcaagagaggtcatccatggcctgttcttctcagataagcgatatgatcttggtgaa
gtaggtcgttacagaatcaataaaaaactcggtcttgatattgaggcggagaagattgtt
ctgaccacggaagatattattaacatcgtaaaatacctgattggtcttatcaactccaag
gcagtggtcgatgatattgatcacttgagtaacaggagagtaagaaccgttggggagcaa
ttatatagccagttcggtgtaggacttgccagaatggcaagaaccatccgtgaaagaatg
aatgtaagggacaacgaggactttaagcccgtggacctgatcaatgcaaggactctttcc
tcagtgatcaactctttcttcggaactaaccagctatctcagtttatggaccagaccaac
ccgttggcagagcttacgcacaaacgtaggttgtccgctttgggaccaggtggtctatcc
agagaacgagcaggatttgaggtacgtgacgttcactatacccactatggtcgtctgtgt
accattgagacaccagaggggccaaatattggattgatttcctccctttgtgtgcatgcc
aaagtgaactccatgggcttcttggaaacaccatacagaaaggtgaaggcaggaaaggcc
ggtatgaagacagaagatatcgttttccttactgctgaagaagaggacaataataacatt
gcacaggccaatgcgccattggaggctgatggcagctttgtgaatgaccgtgtaaaggcg
cgctatgaaggtgacttccctgtgctcgagccgaaggaaatcagttatatggacgtagcg
ccaaaccagattgtatctgtggccgcttccttgattcctttcttggagcatgatgatgcc
aaccgtgccctgatgggatccaatatgcagcgccaagccgtaccgcttctgaaagctgaa
tcgccgatcgtaggtaccggacttgaagcaaaggctgcagtggactcccgttcattgatt
attgccgaggctgatggcgtagtggattttgtggatgcaaagaaaattgtcattaagtat
gacttgagtgacgatgagctattggtgaacttcagtgatgaatataaggcttatgacctt
atcaagttcagaagaactaaccaagatacgaccattaacctgacgcctttagtgctgaag
ggccagcgtgttaccaaaggacaggtactggtagaaggatattcaaccaaccaaggtgaa
ctggctttgggtaaaaaccttaaagtggcttacatgccatggcaaggatataactttgag
gatgcaattgtaatttccgagcgtgtcgttcgtgaagatatctttacttccatccacgtg
gaagagttccaactagaagtgagggatactaagcgtggtgaggaggaattgacctctgaa
attccaaacgtatcagaagaggccgttaaaaacttggacgaaaatggtattatccgtatc
ggtgctgaactgaaagagggagatatcattatcggtaagattacaccaaaaggagaaaca
gatcctactcctgaggaaaagctccttagagcgatctttggtgacaaagctggagatgtg
aaagatgcctcacttaaggcctctccatcccttaatggtgtggtgatcgaaaccaagttg
ttctccagacctaaaaaggacaaggaccttcgtgcaaaagccaaagcggaagtagaaaaa
ctcaagcaaacttacacaaaggaacttcttggagtaagggctaagatgatcaataaattg
gtcagcatactggaaggtatgacctctttgggtgttaagcacaaatttggtgatgaaatc
atcagcaaaggagtgaagtttaaccaccaaaacatagagaataatcttttccctgctaag
aatccgtacagggatgagagtaactataatgtaccggaggaagcgaatcttatttcagat
atcatccttgatgactggacagaagatgagcacaccaacagcttgatccagcaattggtg
aaaaactataccaataccagaaatgaaatctctggtaggtttaagcgagacaggtttacc
ctggaagtaggtgatgaacttcctgccggaatcgtcagacttgccaaagtttacgtggct
aagaagcgtaagctaaaagtaggtgataagatggcgggtcgtcacggtaataaaggtatt
gtggcgaaaatcgtgcgtgatgaagatatgccgttcctggaagacggaacgccaatggac
atcgtgctaaatccgctgggtgtaccttcccgtatgaacattgggcagatatttgagacg
gtgcttgcttgggccggacagaaactgaacaagaaatatgcaacaccaatctttgatggt
gctaccactgaagaagtagctgcagaactggatctggcaggtttgccttccttcggaagg
acgtatctatatgatggtctgacaggaaagcagtttgatcagccggtgaccgtaggtatc
gcttatatgctgaagctgggtcacttggtagatgataagatgcacgcaagatcgattggt
ccatactccctcatcacgcaacagccacttggtggtaaggcccagtttggtggtcagcgt
tttggagagatggaggtttgggcattggaggccttcggtgcttcccatgtgctacaagaa
attcttaccgtgaagtctgatgatgtgattggtagagccaaggcttacgagtccatagta
aaaggtgaaaaccttccaaaaccaaatattcctgaatcctttaatgtattggttcatgaa
ctaagaggtttggcactagaaatcacactcgactaa
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