KEGG   Ehrlichia chaffeensis Liberty: ECHLIB_0205
Entry
ECHLIB_0205       CDS       T03190                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
echl  Ehrlichia chaffeensis Liberty
Pathway
echl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:echl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ECHLIB_0205 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:echl03021]
    ECHLIB_0205 (rpoB)
   03400 DNA repair and recombination proteins [BR:echl03400]
    ECHLIB_0205 (rpoB)
Enzymes [BR:echl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ECHLIB_0205 (rpoB)
Transcription machinery [BR:echl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ECHLIB_0205 (rpoB)
DNA repair and recombination proteins [BR:echl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ECHLIB_0205 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AHX06283
LinkDB
Position
221863..226005
AA seq 1380 aa
MSSSVTSTKYVLNSFNSVPRLSYAKSIDIKDSLTDLIKIQRDSYNAFIGIDQNTESGIKN
IFQSMFPIQDLLGRAVLEFVSYSIGEPQYDEYECIKRGITFSVPIRIVLRFIVWKVQEVS
FKEVKYVVDEETSEKSIKYIKEQEVSIGDLPTMTSHGTFIINGIERVIVSQMHRSPGVFF
DSDKGKTYSSGKLIYSARIIPYRGSWLDFEFDIKDILYFRIDRKRKLPVSLLLRALGLSN
NDILDTFYDKIRYVKSEKGWVVPFVADRFRGVRLSHDLMDSDGNVLVKANTRITLRMARK
LANDGLTKYLVPFNEIQGLFIANDLLDSTGNALIISAGENITSEHINKLELFNIEEIFVL
NIDFLTVGPYILNTLFLDKNVSYEDALFEIYKVLRSGESPSLDTIKAFFDGLFFEKERYD
LSTVGRIKLNDHLGLNVSEDITVLTKDDIIHVIKKLVLLRDGEGSVDDIDHLGNRRVRSV
GEFIENQFRIGILRLERMIMDYMSSVNFDNAMPCDFVNPKVLATVLKDFFSSSQLSQFMD
QTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSLA
IYARINKHGFIESPYRKVDKGVVTDKVEYLLAMQESNYYIADASATLDENNQFVDDMLYC
RHDGNFVMVKREEVDYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKAD
APLIGTGMESIVAAGSGTVVLAKRGGIVHRVDGLYIVIRAFDQEKNEYLGVDIYNLRKFQ
RSNHNTCINQRPLVKPGDYVKANDVIADGSAIDQGELALGKNVLVAFMSWQGYNFEDSIV
ISSEVVKKDVFTSIHIEEFECVVRDTTLGPEKIMRSVPDINEDSLSHLDDVGIVNVGAEV
SAGDILVGKVTPRPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPLDVEGTVVDVHVFVRR
GVEENDRSLLIKQNEINGFIKERDYEIDVVSEYFYDELKRVLVSSGVQYNNQNIDDYLAS
IPKKEWWDINLSDEAMLLQVKDLKEKFDSMIQNAHSKFDQKIDKLNYGYDLPQGVLCIVK
VFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVGQ
ILETHLGWASVNLGKKIGHILDNLDELTVSHLRNFLYQVYDGQDLKDNIQSMSDEDLLVF
AERLRDGVPMAAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYM
LKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLT
VKSDDIVGRVKIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVALKQDKDFLSNEVKD
NT seq 4143 nt   +upstreamnt  +downstreamnt
atgtcttcttctgtaacttctactaaatatgtattaaattcttttaattcagtgcctaga
ttatcttatgcaaagtcaatagatataaaagattcgttaactgatttaataaaaatacag
agggattcatacaatgcatttattgggatagatcaaaatactgaaagtggaataaagaat
attttccaatctatgtttcctatacaagacttattaggtcgggctgttcttgagtttgta
agttatagtattggtgagccacagtatgatgagtatgaatgtataaaaaggggtattact
ttttctgtacctatacgtatagttctgcgttttatagtatggaaggttcaggaagtatct
ttcaaggaagtaaaatatgtagtagatgaagaaacatcagaaaagagtataaaatatata
aaagagcaagaggtttccataggagatcttcctaccatgacttctcatgggacgtttatc
ataaatggaatagaaagagtgatagtatcacaaatgcatcgttctcctggtgtatttttt
gatagtgataaaggaaaaacttatagttctgggaaattaatttattcggccagaattatt
ccttatagaggttcatggttagactttgaatttgacataaaagatatactttattttcgc
attgataggaagaggaagctaccagtctctttacttttaagagctttaggtttatctaat
aatgatattttggatactttctatgataaaatacgttatgtaaaatctgaaaaaggatgg
gttgttccatttgttgctgatagatttaggggtgttagattatctcatgatcttatggat
tcagatggtaatgtattggtgaaagctaataccagaattactttaagaatggctagaaaa
ttagctaatgatgggcttacgaagtatttagttccatttaatgaaattcaaggattattt
attgctaatgatttattagattcaactggaaatgctttaattatatctgcaggagaaaat
attactagcgagcatataaacaaactagaattgtttaatatagaggaaatctttgtttta
aatatagattttctaacagttggtccatatattttaaataccttatttttagataaaaat
gtatcttatgaagatgcgctgtttgaaatatataaagttttacgttctggtgaatcacct
agtttagatactataaaagccttttttgatgggttattttttgaaaaagaaagatatgac
ctatctactgttggaagaataaagttaaatgatcatcttgggttaaatgttagtgaagat
attacggtactaactaaagatgatataattcatgtcataaagaaattagtgttattgcgg
gatggtgaaggttctgttgatgatatcgatcatcttggtaatcgtagagtaagatctgtt
ggtgagtttattgagaatcagtttaggattggtatattgcgacttgaaagaatgatcatg
gattatatgtcttcggtcaattttgataatgcaatgccatgtgattttgtaaatcctaag
gttttggctactgttttgaaagatttctttagctcttctcagctttcccaatttatggat
cagactaatccattatctgaagttactcataaacgtagattatctgctttaggtccaggt
ggtttaactagggaaagagcaggttttgaggttagagacgtacatccaacacattatgga
aggatttgtccaattgaaactccagaaggccaaaatattggattgatcagtagcttggct
atttatgcccgtattaataagcatgggtttattgagagtccttatagaaaagtggataaa
ggagttgttactgataaagtagaatacctgttagctatgcaggaaagtaattattatata
gctgatgctagtgctactcttgatgagaataatcagtttgttgatgatatgctttattgt
aggcatgatggaaattttgtaatggttaagagggaagaagttgattatatagatgtttct
ccaaagcaaatagtttcagttgctgcgtctttaatacctttcttagagaataatgatgca
aaccgtgccttaatgggttctaatatgcaacgtcaagcagtacctttattaaaagcagat
gctcctttgattggtactggtatggaatcaatagttgctgcaggatcaggaacagttgtt
ttagctaaacgtggaggtattgttcatagggtagatggactgtatatagttattcgtgcg
tttgatcaggaaaaaaatgaatatttaggtgttgatatttataacttaaggaaattccaa
cgttctaatcataatacttgtattaatcagcgacctttagttaaacctggagattatgta
aaagcaaatgatgttatagctgatggatcagcaattgatcaaggtgagcttgctttgggt
aagaatgtgttggttgcgtttatgtcttggcagggatataactttgaagattcaatagtt
atttcaagtgaagttgtaaagaaagatgtatttacttcaatacatatagaagaatttgaa
tgtgtagttagagatacaacgcttggtccggaaaagattatgaggtctgttcctgatatc
aatgaggatagtttatctcatttggatgatgttggaattgttaatgttggagctgaagtt
tctgcaggagatattttggttggtaaagtgacacctagaccaccagtttctttacctcca
gaaacaaaattgttagttactatttttggtgaaaaagtatttgattgtgtagattcttca
ctatatttgccacttgatgttgaagggacagtagttgatgtgcatgtttttgtgcgtcgt
ggtgttgaagaaaatgatagatctcttttaattaaacaaaatgaaatcaatggttttata
aaagaaagggattatgaaatagatgtagttagtgagtatttctatgatgaattgaaaaga
gttttggtgagttctggtgtacagtataataatcagaatatagatgattatttagcatct
attccaaagaaggaatggtgggatattaacttatctgatgaagctatgttgcttcaagtt
aaggacttgaaagaaaaatttgattcaatgattcaaaatgctcatagtaagtttgatcaa
aagatagataaattaaactatggatatgatttacctcaaggtgttttgtgtatagttaaa
gtttttgttgcagtaaaacataatttacagccaggagataaaatggctggtagacatggt
aataagggggtgatttctcgtattgtacctgttgaagatatgccatacttagaggatggc
actcctgttgatattatactgaactctttgggtgtaccttctcgtatgaatgttgggcag
attttagagacgcatttaggatgggcatctgttaatttagggaaaaagatagggcatata
ttagataaccttgatgaattgacggtatctcatttaagaaactttttatatcaagtatat
gatgggcaagatttaaaagataatattcagtctatgagtgatgaggatcttttggttttt
gcagaaagattgcgtgatggcgtgcctatggctgcaccagtatttgaagggccaaaagat
agtcaaatttctaacttattaagattagctgatttagatgtttcagggcaagtagatctt
tatgatggaagaattggtgaaaaatttgatcgtaaggttactgtaggatacatatacatg
ttaaagttacatcacttagtggatgataaaatacatgcaagatctgttggtccatatggg
ttggtaactcagcaaccattaggtggaaaatctcattttggtggtcaacgttttggagaa
atggaatgttgggcattgcaagcttatggagctgcttataccttacaagaaatgcttaca
gtaaaatctgatgatattgttggaagagttaagatttatgaatctatcattaagggtgat
agtaattttgaatgtggaataccagaatcctttaatgtaatggtaaaagagttaagatca
ttgtgtttagatgttgctttaaagcaagataaggatttcttaagtaatgaagtgaaagat
taa

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