Enterobacter cloacae ECNIH5: ECNIH5_15370
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Entry
ECNIH5_15370 CDS
T03706
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecli
Enterobacter cloacae ECNIH5
Pathway
ecli03030
DNA replication
ecli03410
Base excision repair
ecli03420
Nucleotide excision repair
ecli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECNIH5_15370 (ligA)
03410 Base excision repair
ECNIH5_15370 (ligA)
03420 Nucleotide excision repair
ECNIH5_15370 (ligA)
03430 Mismatch repair
ECNIH5_15370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecli03032
]
ECNIH5_15370 (ligA)
03400 DNA repair and recombination proteins [BR:
ecli03400
]
ECNIH5_15370 (ligA)
Enzymes [BR:
ecli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECNIH5_15370 (ligA)
DNA replication proteins [BR:
ecli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECNIH5_15370 (ligA)
DNA repair and recombination proteins [BR:
ecli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECNIH5_15370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECNIH5_15370 (ligA)
MMR (mismatch excision repair)
DNA ligase
ECNIH5_15370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECNIH5_15370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AIX60062
LinkDB
All DBs
Position
complement(3270015..3272030)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLA
VSILYENGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEESRRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGDLPDTHL
GRLMQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ATIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaacttactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcaccggaagtgccggatgcggaatatgaccgcctgatgcgt
gaactgcgcgagctggaagcgcagcacccggagctgattacgcccgattccccaacgcag
cgcgtcggcgcggaaccgctgggtgctttcagccaggtgcgccacgaagtgccgatgctg
tcgctggataacgtgtttgatgaagagagttttctggctttcaacaagcgcgtgcaggat
cgcctgaagagcgtcgacaatctgagctggtgctgcgagctaaaactggatggtctggcc
gtcagcattctttatgagaacggcgtgatggtacgtgccgcaacgcgcggcgacggcacc
accggggaagacatcaccaccaatgtgcgcaccattcgtgcgatcccgctgaagctgcgt
ggcgataacattcctgcgcggctggaagtgcgcggggaagttttccttccgcaggcgggc
tttgagaagatcaatgaagaatcgcgtcgtaccgggggtaaagtgtttgcaaacccgcgt
aacgcggcggcaggttcgctgcgccagctcgatccgcgtatcaccgcgaagcgaccgctt
actttcttctgctacggcgtcgggatcctggaaggcggtgacctgccggatacccacctg
ggtcgtttaatgcagttcaaagagtggggtttgccggtaagcaaccgcgtgcagctttgc
gactctccagaggcggtgctggcgttctatcacaaggttgaagaagatcgtcccacgctt
gggtttgatattgatggcgtagtgatcaaggttaactccctggcattgcaggaacagttg
ggttttgttgcccgggcgccacgctgggcagtggcctttaagttcccggcgcaggagcag
atgaccttcgttcgcgacgtggaatttcaggtaggacgtacgggtgcgattacgcctgtg
gcgcgtctggagcctgtgcaggtggctggcgtgctggtcagtaacgctacgctgcataac
gccgatgaaattgcccgtctggggctgcgaattggtgacaaagtggtgattcgccgcgcg
ggcgatgtgatcccgcaggtggttaacgtagtggaatcagaacgtcctgccgatacccgt
gccatcgagtttcctgcccattgtccggtatgtggttcggacgttgagcgcgtggaaggt
gaagcggtaacgcgctgtacgggcgggttaatctgcggcgcgcagcgtaaagagtccctg
aagcactttgtctcccgccgggcgatggacgtcgacggaatgggtgacaagatcatcgac
cagttagttgagaaagagtatgtccatacgccagcggacctctttaccctgacggcaggt
aagctgaccggtcttgatcgtatggggccgaaatctgcccagaacgtggtcaatgcgctc
gaggcggccaaaaatactacctttgcccgtttcctttacgcgctcggcattcgtgaagtc
ggagaggcgacggcggcagggctggcggcgtatttcggcacgctggaggctcttgagaaa
gccaccatcgacgaactacagaaagtccctgacgttggtatagtggtcgctacccacgtc
ttcaacttcttcgccgaagagagcaaccgtgaagtgatcggtaaattactggaacagggc
attcactggcccgcaccggtagtggttaatgcagaagagatcgacagcccgtttgcaggt
aaaacggtggtgctgaccggcagtctgagccagctctcgcgtgatgacgcgaaagcgcgc
ctggtggcgcttggggcaaaagtggcgggaagcgtgtcaaagaaaaccgacctggtgatc
gccggggaagcggccggttcgaagctggcaaaagcgcaggagctcggcatcgaggtgatc
gatgaagcggaaatgatgcgccttttaggagagtga
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integrated database retrieval system
