Escherichia coli K-12 MDS42: ECMDS42_0138
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Entry
ECMDS42_0138 CDS
T02541
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ecok
Escherichia coli K-12 MDS42
Brite
KEGG Orthology (KO) [BR:
ecok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecok03016
]
ECMDS42_0138 (ligT)
Enzymes [BR:
ecok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
ECMDS42_0138 (ligT)
Transfer RNA biogenesis [BR:
ecok03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
ECMDS42_0138 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BAL37457
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All DBs
Position
complement(156326..156856)
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AA seq
176 aa
AA seq
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MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKAL
SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR
PFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWALTQ
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccgcaacgtctgttctttgctatcgacttacctgcagaaatccgcgaacag
attatccattggcgcgccacacacttcccacctgaggcgggacgtccggtcgccgccgat
aatttgcatctgactctggcatttttaggcgaagtgagcgccgagaaagagaaggcgctt
tctcttttagccggacggattcgtcaacctggtttcacactcacgcttgatgacgccgga
caatggctgcgttcgcgtgtggtgtggttagggatgcgtcagccgccacgcggcttaatc
cagctggcgaatatgctccgttcacaggctgcccgcagcggttgttttcaaagcaatcgt
ccgtttcatccacatattaccttattgcgcgacgccagcgaggcggtgacaatcccgccg
ccaggttttaactggtcgtatgcggtgacggagttcaccctttacgcctcctcgtttgcc
cgtggacgcacacgctacacgccgctaaaacgctgggcgctaacgcaataa
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