Escherichia coli K-12 MDS42: ECMDS42_3424 Help Entry ECMDS42_3424      CDS       T02541                                  Symbol rpoB Name (GenBank) RNA polymerase, beta subunit   KO K03043   DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Organism ecok  Escherichia coli K-12 MDS42 Pathway ecok03020   RNA polymerase Brite KEGG Orthology (KO) [BR:ecok00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     ECMDS42_3424 (rpoB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:ecok03021]     ECMDS42_3424 (rpoB)    03400 DNA repair and recombination proteins [BR:ecok03400]     ECMDS42_3424 (rpoB) Enzymes [BR:ecok01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      ECMDS42_3424 (rpoB) Transcription machinery [BR:ecok03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      ECMDS42_3424 (rpoB) DNA repair and recombination proteins [BR:ecok03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       ECMDS42_3424 (rpoB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 SPG4 Motif Other DBs NCBI-ProteinID:  BAL40547 LinkDB All DBs Position 3610458..3614486 Genome browser AA seq 1342 aa AA seqDB search MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP ESFNVLLKEIRSLGINIELEDE NT seq 4029 nt NT seq  +upstreamnt  +downstreamnt atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaaatttatcgag caagatcctgaagggcagtatggtctggaagctgctttccgttccgtattcccgattcag agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt gacgtccaggaatgtcaaatccgtggcgtgacctattccgcaccgctgcgcgttaaactg cgtctggtgatctatgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa gaagtctacatgggcgaaattccgctcatgacagacaacggtacctttgttatcaacggt actgagcgtgttatcgtttcccagctgcaccgtagtccgggcgtcttctttgactccgac aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtatcatcccttaccgt ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtatcgaccgt cgccgtaaactgcctgcgaccatcattctgcgcgccctgaactacaccacagagcagatc ctcgacctgttctttgaaaaagttatctttgaaatccgtgataacaagctgcagatggaa ctggtgccggaacgcctgcgtggtgaaaccgcatcttttgacatcgaagctaacggtaaa gtgtacgtagaaaaaggccgccgtatcactgcgcgccacattcgccagctggaaaaagac gacgtcaaactgatcgaagtcccggttgagtacatcgcaggtaaagtggttgctaaagac tatattgatgagtctaccggcgagctgatctgcgcagcgaacatggagctgagcctggat ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat ctggatcacggcccatatatctctgaaaccttacgtgtcgacccaactaacgaccgtctg agcgcactggtagaaatctaccgcatgatgcgccctggcgagccgccgactcgtgaagca gctgaaagcctgttcgagaacctgttcttctccgaagaccgttatgacttgtctgcggtt ggtcgtatgaagttcaaccgttctctgctgcgcgaagaaatcgaaggttccggtatcctg agcaaagacgacatcattgatgttatgaaaaagctcatcgatatccgtaacggtaaaggc gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct ctgggcgatctggataccctgatgccacaggatatgatcaacgccaagccgatttccgca gcagtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaacccg ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgt gaacgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca atcgaaacccctgaaggtccgaacatcggtctgatcaactctctgtccgtgtacgcacag actaacgaatacggcttccttgagactccgtatcgtaaagtgaccgacggtgttgtaact gacgaaattcactacctgtctgctatcgaagaaggcaactacgttatcgcccaggcgaac tccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggc gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg atgggtgcgaacatgcaacgtcaggccgttccgactctgcgcgctgataagccgctggtt ggtactggtatggaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgt ggtggtgtcgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag atgtatccgggtgaagcaggtatcgacatctacaacctgaccaaatacacccgttctaac cagaacacctgtatcaaccagatgccgtgtgtgtctctgggtgaaccggttgaacgtggc gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgcttggtcagaacatg cgcgtagcgttcatgccgtggaatggttacaacttcgaagactccatcctcgtatccgag cgtgttgttcaggaagaccgtttcaccaccatccacattcaggaactggcgtgtgtgtcc cgtgacaccaagctgggtccggaagagatcaccgctgacatcccgaacgtgggtgaagct gcgctctccaaactggatgaatccggtatcgtttacattggtgcggaagtgaccggtggc gacattctggttggtaaggtaacgccgaaaggtgaaactcagctgaccccagaagaaaaa ctgctgcgtgcgatcttcggtgagaaagcctctgacgttaaagactcttctctgcgcgta ccaaacggtgtatccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaaacaggcgaagaaagacctg tctgaagaactgcagatcctcgaagcgggtctgttcagccgtatccgtgctgtgctggta gccggtggcgttgaagctgagaagctcgacaaactgccgcgcgatcgctggctggagctg ggcctgacagacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcgac gatctggcaccgggcgtgctgaagattgttaaggtatatctggcggttaaacgccgtatc cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgtaatttctaagatcaac ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgtactgaacccg ctgggcgtaccgtctcgtatgaacatcggtcagatcctcgaaacccacctgggtatggct gcgaaaggtatcggcgacaagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa ctgcgcgaattcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagttgac ctgagtaccttcagcgatgaagaagttatgcgtctggctgaaaacctgcgcaaaggtatg ccaatcgcaacgccggtgttcgacggtgcgaaagaagcagaaattaaagagctgctgaaa cttggcgacctgccgacttccggtcagatccgcctgtacgatggtcgcactggtgaacag ttcgagcgtccggtaaccgttggttacatgtacatgctgaaactgaaccacctggtcgac gacaagatgcacgcgcgttccaccggttcttacagcctggttactcagcagccgctgggt ggtaaggcacagttcggtggtcagcgtttcggggagatggaagtgtgggcgctggaagca tacggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca gaatccttcaacgtattgttgaaagagattcgttcgctgggtatcaacatcgaactggaa gacgagtaa

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