Escherichia coli O81 ED1a (commensal): ECED1_1497
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Entry
ECED1_1497 CDS
T00827
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ecq
Escherichia coli O81 ED1a (commensal)
Brite
KEGG Orthology (KO) [BR:
ecq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecq03016
]
ECED1_1497 (rnb)
Enzymes [BR:
ecq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ECED1_1497 (rnb)
Transfer RNA biogenesis [BR:
ecq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ECED1_1497 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OSR1_C
S1CSD-TOTE-2
ODP
PilZ
Motif
Other DBs
NCBI-ProteinID:
CAR07695
UniProt:
B7MUC9
LinkDB
All DBs
Position
complement(1467299..1469230)
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPDHPLLNAIPCRAARGLNHE
FKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATE
MLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDGKLQLIVAIADPTAWIAEGSKL
DKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSTDGTIEDNIEFF
AATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDR
PDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDP
ANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEP
GPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMA
ERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDEL
VCSQENGTVQIKGETAYKVTDVIDVTIAEVRMETRSIIARPVA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgcca
cgcgctgaaggggtggtaaaagccacagaaaaaggctttggcttcctggaagtcgacgcg
caaaaaagttatttcattccgccgccgcagatgaaaaaagtcatgcatggcgaccgaatt
atcgcggtgatccacagtgaaaaagaacgtgaatccgcagagccagaagaactggttgaa
ccgttcctgactcgtttcgtgggtaaagttcagggcaaaaatgaccgtctggccatcgtt
cctgatcatccactcttaaacgccattccttgccgcgcagcccgtggcctgaaccacgag
tttaaagaaggcgactgggcggttgccgaaatgcgccgtcatccgctgaaaggcgatcgt
tctttctatgctgaactgacacaatacatcacttttggtgacgatcactttgtaccgtgg
tgggttacccttgcgcgtcataatctggaaaaagaagcaccagacggcgtcgctaccgaa
atgctcgatgaaggtctggttcgtgaagatctgactgcgctggattttgtcaccatcgac
agtgccagcacagaagatatggatgacgcccttttcgccaaggcgttaccggatggcaaa
cttcagctgattgtggcgattgccgatccaaccgcgtggattgctgaaggcagcaagctg
gacaaagccgcgaaaattcgcgcattcaccaactatctgcctggcttcaacatccctatg
ctgcctcgcgagctttctgacgatctctgctcactgcgcgccaatgaagtccgcccggta
ctggcatgccgcatgacgctctccactgatggcaccattgaagataatatcgaattcttt
gccgccaccatcgaatccaaagcgaagctggtgtatgaccaggtttctgactggctggaa
aataccggtgactggcagcctgaaagcgaagcaattgccgaacaagtccgtttgctagca
caaatttgccaacgccgcggcgagtggcgtcataaccacgcactggtgtttaaagatcgc
ccggattaccgctttattctcggtgaaaaaggtgaagtgctggatatcgttgccgagcct
cgtcgcattgccaaccgtatcgtcgaagaagcgatgattgccgctaacatttgtgcggcc
cgcgtactgcgcgataagctcggttttggcatctataacgtgcatatgggctttgatccg
gcgaatgccgacgcgctggcagcgttgctgaaaacgcacggtctgcatgtcgatgctgaa
gaagtgctcacgctggacggtttctgcaaactgcgtcgtgaactggatgcgcaaccaact
ggtttcctcgacagccgcattcgtcgcttccagtcatttgctgaaattagcactgaaccc
ggtcctcactttggcctcggtctggaagcatacgccacctggacttcgccgatccgtaaa
tatggcgacatgatcaaccaccgtctgctgaaagcggttatcaaaggcgaaactgcgacg
cgtccacaggatgaaatcactgtccaaatggccgagcgtcgccgtctcaaccggatggca
gaacgtgatgttggcgactggttatacgcacgcttcctgaaagacaaagccgggaccgac
acccgtttcgcggcggaaattgtcgatatcagccgtggcggcatgcgtgttcgtttggtt
gataacggcgctatcgcctttattccagcacctttcttacacgctgtgcgcgatgaactg
gtttgcagccaggaaaacggcactgtacaaattaaaggtgaaacggcttacaaagtgact
gacgttattgacgtcaccattgccgaagtccgcatggaaacccgcagcattattgcgcgc
ccagtcgcgtaa
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