Escherichia coli O81 ED1a (commensal): ECED1_2855
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Entry
ECED1_2855 CDS
T00827
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecq
Escherichia coli O81 ED1a (commensal)
Pathway
ecq03030
DNA replication
ecq03410
Base excision repair
ecq03420
Nucleotide excision repair
ecq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECED1_2855 (ligA)
03410 Base excision repair
ECED1_2855 (ligA)
03420 Nucleotide excision repair
ECED1_2855 (ligA)
03430 Mismatch repair
ECED1_2855 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecq03032
]
ECED1_2855 (ligA)
03400 DNA repair and recombination proteins [BR:
ecq03400
]
ECED1_2855 (ligA)
Enzymes [BR:
ecq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECED1_2855 (ligA)
DNA replication proteins [BR:
ecq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECED1_2855 (ligA)
DNA repair and recombination proteins [BR:
ecq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECED1_2855 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECED1_2855 (ligA)
MMR (mismatch excision repair)
DNA ligase
ECED1_2855 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECED1_2855 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DZR_2
Prok-E2_C
RNA_ligase
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
CAR09030
UniProt:
B7MY64
LinkDB
All DBs
Position
complement(2802550..2804565)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLMQFKAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGLKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DETEMLRLLGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgc
gaactgcgcgagctggaaaccaaacatccagaactgattacgcctgattcgcctacccaa
cgtgtaggtgctgcgccgctggcggctttcagccagatccgccatgaagtgccaatgctg
tcgctggataacgtttttgatgaagaaagctttcttgccttcaacaaacgagtgcaggac
cgtctgaaaagcaacgagaaagtcacctggtgctgtgagctgaagctggatggtcttgcc
gtcagtattctgtatgaaaatggcgttttagtcagtgccgcaactcgtggcgatggcacc
accggggaagatatcacgtctaatgtgcgtactattcgcgccattccgctgaagctacac
ggtgagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggg
ttcgaaaagattaacgaagatgcgcgacgcacgggcgggaaagtgtttgctaacccacgt
aatgcggcagctggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
actttcttctgctacggcgttggtgttctggaaggcggtgaattgccggatacccatttg
ggacgcttaatgcaatttaaagcgtggggattacctgtcagtgatcgggtaacactttgt
gaatcggcggaagaagtgctggcgttttatcacgaagtagaaaaagaccgtccgacgctg
ggctttgatatcgacggcgtggtgattaaggtcaactcactggcacagcaggagcagctt
ggctttgtcgcgcgtgccccgcgctgggcggtagcgtttaaattcccggcgcaggaacag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtctggaacctgtccatgttgctggcgtgttggtgagtaacgctacactgcataat
gctgacgaaatcgaacgtcttggtttacgcattggcgataaagtggttattcgccgcgct
ggcgacgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgtccggtatgtggttctgacgtcgagcgtgtggaaggt
gaagcggttgcccgctgtaccggtggcctgatttgcggtgcgcagcgtaaagagtctctg
aaacactttgtttcccgccgtgcgatggatgttgacggaatgggcgacaaaatcatcgat
caactggttgaaaaagaatatgtccacactccggcggatctgttcaaactcaccgcaggc
aaactgaccggactggagcgtatggggctgaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgctcgcttcctctatgcacttggcatccgtgaagtc
ggcgaggccaccgcagcaggtctggcggcatatttcggcacgctggaagcgctggaagcc
gcttcgattgaagagctgcaaaaggtgcctgatgttggaattgtcgttgcctcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgagccgatcgttatcaatgcggaagagattgacagtccgtttgctggt
aaaaccgtggtgcttacgggcagcttaagccagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggggcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaaacggaaatgctgcgtttgctgggtagctga
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integrated database retrieval system
