Etheostoma cragini (Arkansas darter): 117939237
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Entry
117939237 CDS
T07493
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117939237 (scn1lab)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117939237 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
Spem1
IQ
New_glue
Motif
Other DBs
NCBI-GeneID:
117939237
NCBI-ProteinID:
XP_034720275
LinkDB
All DBs
Position
24:2507351..2552128
Genome browser
AA seq
2026 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERCIAEEEAQRPRVERRNDSDDENGPRPNSDLEAGK
SLPFIYGDIPPHMVSTPLEDLDTYYSNQKSFIVLNRGKAIFRFNATPALYILSPFNPLRR
VAIRVLVHSMFSMLIMFTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVREPIYSNATNSSSNITADTTM
FFSNNTLLDVNMAFMQNATESSFNWTEYISDERNYYYLPGRRDALLCGNGSGAGLCPEGF
ICIKAGRNPDYDYTSFDSFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFL
GSFYLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESG
EYSGRGGPTSESSSGTSKLSSKSAKERRNRWKKRKQREEEERGGRDKFHKSESEDSIKRT
SFRFSIDANRLSYEKRCSSPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDMGSENDFAD
DEHSTFEESDSRRGSLFLPRRLERRCSAVSQTSLGAPRVMLPANGKMHCAVDCNGVVSLV
GGTSVTTSPVGLLLPEGTTTDTELKKRRSGFRKPSMDYLDETVARQRAMSVASILTNTME
ELEESRQKCPPCWYRFANTCLIWDCSPTWLKFKDIVCTVVMDPFVDLAITVCIVLNTLFM
AMEHYPMTKEFDNVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLM
ELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFA
VVGMQLFGKNYKECVCKISDSCQLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQ
SMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVGRIQRGIAF
VKSKVRQFFQSLCFGRAGKGSGLGEEIKPLDELHSNGKGNCISNHTSVEITKDPSGVYMT
EGNGRPGGGLVVGVGGDTTPKFPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFS
SDSSDVEGSKEKLDAEPHPLSSSEGSTVDIRPPGDGVDSVELEPEESLEPEACFTEGCVS
RFQCCQINEDDDHFKTWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDVYIEQRRT
IKTVLEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYS
ELSAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVN
LFAGKYYYCVNTTNDEVFPINVVNNKSECLNLVNDSARWKNVKINFDNVGAGYLALLQVA
TFKGWMDIMYAAVDSRDLEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQ
KKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNSFQGCVFDCITKQAFDIVIMI
LICLNMVTMMVETDDQTPEMDKILYWINLVFIILFTAECMLKMISLRHYYFTIGWNIFDF
VVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPA
LFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGL
LAPILNKREPDCDSQMEHPGNNYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENF
SVATEESAEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSAFADALDPPLRMAKPNMLQL
ISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEERFMASNPSKVSYEPITTT
LRRKQEDMAAVIIQRAFRRYMMRLAMKKASTLYKEKLKEGLRDPDKDVMVISKFNENSTS
DKTDMTPSTASLPSYNSVTKSDKDKYEKEKKRERQKDVDFLNKNKK
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcacaactgcttgtaccgcccggacctgacagcttccgccccttcgtgccagagtcg
ttggccgccatcgagaggtgcatcgccgaggaggaggcccagagaccacgggtggagcgc
cgtaacgacagcgacgatgaaaatgggcccagaccaaacagtgacctggaggcggggaaa
tctctccccttcatctatggggacatccccccccacatggtgtccacccctctggaggac
ttggacacctactacagcaatcagaagagcttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaacgccactcctgccttgtacatcttaagccccttcaaccctctaaggagg
gttgctattagagttttagtgcactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaatcccccggattgggccaagaatgtggagtac
acattcacagggatttacacctttgagtcccttataaagatcctggctaggggcttctgt
gtggggaagttcactttcctgcgggacccgtggaactggctggatttcagtgttatcctc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactgcgaaccttcagg
gttctgcgagccttgaaaactatttcagtcatcccaggcttgaagaccattgttggtgcg
ctgatccagtcggtaaaaaagctctcagacgtcatgatcctcaccgtgttctgcctcagc
gtcttcgccctcatcgggctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgt
gagcccatctacagcaatgccaccaacagcagcagcaacatcaccgccgacaccacgatg
tttttcagcaacaacaccctgctggatgtcaacatggcattcatgcagaacgccacagag
agctccttcaactggacggagtacatcagcgatgagagaaattactattacctccctggc
cgtagggatgctctgctctgtgggaatggcagtggcgccgggctctgtccggagggcttc
atatgcatcaaagctggtcgtaatcccgactacgactacaccagctttgactccttcagc
tgggcgttcctctccctcttccgtctcatgacccaggacttctgggaaaacctctaccag
cagactttgcgcgcggcaggtaaaccctacatgatcttcttcgtgctggtgatcttcctg
ggctccttctacctggtcaacctgatcctggccgtggtggccatggcctatgacgagcag
aaccaggcgaccatcgaggaggcccagcagaaggaggaggagttccaggccatgctggag
cagctgaagagacagcaggaggaggcacaggttgctgcggcagccgccacggaaagcggg
gagtacagcgggagaggtggccccacctcagagtcctcctcggggacgtctaagctcagc
tccaaaagtgccaaggagcgacgcaacaggtggaagaagagaaagcagagggaggaggag
gagagggggggccgggataagttccacaagtctgagtctgaggacagcatcaagagaact
agcttccgcttctccatcgatgccaatagactttcttatgaaaagagatgctcctcaccc
aaccagtctctcctcagtatccgcggatccctcttctcacctcggaggaacagccgcgcc
agcctgttcagcttccgcggccgggcgcgtgacatgggctccgagaacgacttcgccgac
gacgagcacagcacctttgaggagagcgacagccgtcggggctcactgttcttgccgcgc
cgtctcgagcgccgctgcagcgccgtcagccagaccagcctcggggcgccgcgggtcatg
ctgcccgccaacggcaagatgcactgtgccgtggactgcaacggtgtggtgtcgctggtc
ggcggaacctctgtgacaacctcccctgtaggtctcctgctgcctgaggggacaactaca
gataccgagctcaagaaacgccggtcaggttttcgcaagccatccatggattatttagat
gaaacggtggccaggcagagagccatgagcgtggccagtatcctcaccaacaccatggaa
gagcttgaagagtcgagacagaaatgtcccccctgctggtatagatttgccaacacctgt
ctgatctgggattgtagccccacgtggttgaaatttaaggatattgtctgcacggtggtc
atggacccatttgtggatctggccatcacagtttgcattgtcctcaacacccttttcatg
gccatggagcattaccccatgactaaagaatttgacaacgtactctcagttggaaacctg
gtgttcacaggcatcttcacagcagagatgtgcttcaagatcattgccctggatccctac
tactacttccaagagggttggaacatctttgatggtatcattgtcagtctgagtctgatg
gagcttggcttggccaacgtagaaggcctgtctgtgctcaggtcctttagattgttgagg
gtcttcaaactagccaagtcatggcccacattaaacatgctgatcaagatcattggtaac
tcagtgggtgctctggggaacttgactttggtgctggccatcatcgtcttcatcttcgcc
gtagtgggcatgcagctgtttggcaagaactacaaggagtgtgtgtgtaagatttctgat
agctgtcagctgccccgttggcacatgcacgatttcttccactccttcctcatcgtgttc
cgggtgctgtgcggagagtggatcgagacaatgtgggactgcatggaggtggctggacag
tccatgtgcctgatagtcttcatgatggtcatggtcattggaaacctggtggttttaaac
ctgttcctggctctcctcctgagctcattcagcgctgacaatctggcagcaactgacgac
gacaatgagatgaacaacctgcagattgctgtgggccggatccaacggggaatcgcattt
gtcaaatccaaagtgcggcagtttttccagagcctctgctttggccgggccggtaagggc
tccggtctgggtgaggagatcaaacccctggatgaacttcacagcaatggcaaaggaaac
tgcatctccaaccacacttcagtggagatcaccaaggacccaagtggggtgtacatgaca
gagggcaatggaaggccaggaggagggctggtggttggggttggtggggacaccacaccc
aagttcccaatggaggaatgtgactatatgtcatttattcataaccccagcttgacagtc
actgtgcccattgctgtgggcgagtcggactttgagaacctaaacacagaagatttcagc
agcgattcgtcggatgtggagggcagcaaagagaagcttgatgcagagccccatcctctg
agctcatcggaggggagcacagtggatatacgcccaccaggagatggggtggattcagtg
gagctggagccggaggagtcactggaacccgaggcctgcttcacagagggttgtgtgagc
aggttccagtgctgccagataaatgaggacgacgaccattttaagacctggtggacactc
aggaaaacctgctttatcatagtggagcacaactggtttgaatccttcatcatattcatg
atcctgctcagcagtggagcactggcgtttgaggacgtttacatcgagcagcggaggacc
atcaaaacagtactggagtacgcagacaaggtcttcacttatatcttcatcctggaaatg
ctgctgaagtgggtggcatacggctttgtcaagtatttcacaaacgcctggtgctggctt
gacttcctcattgtagacgtgtcactggtcagccttgtagccaacgctctgggctactct
gagctttccgccatcaaatctctgaggacactccgagccctccggccgttgagggccctg
tctcggtttgagggcatgagggttgtggtgaacgcgctgctgggggccatcccatccatc
atgaacgtgctgctggtctgcctcatcttctggctcatcttcagcatcatgggcgtcaac
ctgtttgcagggaagtactattactgcgtcaacaccaccaacgatgaggtgttccccatc
aacgttgtcaataacaagagcgagtgcctgaacttggtcaacgatagcgcccgctggaag
aacgtcaagatcaactttgacaacgtcggtgccggctatctggctctgttgcaagtggca
acatttaagggttggatggacatcatgtacgcagccgtggactctcgcgatttggaggac
cagcctgagtatgaagtgaacttgtacatgtacctctactttgtcatcttcatcatcttc
ggctccttcttcaccctcaacctgttcatcggtgtcatcatcgacaacttcaaccagcag
aagaagaagtttggaggtcaggacatcttcatgacagaagagcagaagaaatactacaat
gccatgaagaagctgggctccaagaaaccccaaaaaccgatacctcgaccaacaaattca
tttcagggctgcgtgtttgactgcatcacgaagcaggccttcgacatcgtgatcatgatc
ctcatctgcctcaacatggtgaccatgatggtggagacggacgaccagacgccggaaatg
gacaaaatcctctactggatcaatctggttttcatcattctcttcaccgccgagtgcatg
ctcaagatgatctccctgcgtcactattacttcaccatcggttggaacatatttgacttt
gtggtggtgatcctgtctattgtaggtatgtttttatccgaagtcatcgagaagtacttt
gtgtccccgacgctgttcagagtgatccgtctggccaggataggccgcatcctccgcctt
atcaaaggtgccaaaggcatccggacgcttctctttgccttgatgatgtcactccccgcc
ttgttcaacatcggcctccttctcttcttggtcatgttcatctacgccatctttggcatg
tccaacttcgcctacgtcaagcgtgaggcggggatcgacgacatgttcaacttcgagacc
ttcgggaacagcatgatctgcctgtttcagatcaccacgtcggccgggtgggacggcctg
cttgcgcccatcctgaacaagcgggagcctgactgcgacagccagatggagcacccgggc
aacaactacaagggcaactgtggcaacccatcggtgggcatcttcttctttgtcagctac
atcatcatctgcttcctgatcgtggtcaacatgtacattgccgtcatcctggagaacttc
agcgtggccacggaggagagtgctgagcccctgagcgaggacgactttgagatgttctac
gaggtgtgggagcgcttcgacccagacgccacccagttcatggagtacagcaagttgtcg
gccttcgctgatgccctagacccgccgctgcgcatggccaaacccaacatgctgcagctc
atctccatggacctgccgatggtgagcggcgagcgcatccactgccttgacatcctgttc
gccttcaccaagcgtgtgttgggcgagagcggcgagatggacgtgctgcgcgggcagatg
gaggagcgcttcatggcgtccaacccatccaaggtgtcttacgagcccatcaccaccacc
ctgcgccgcaaacaggaggacatggctgccgtgatcatccagagggccttccgtcgctac
atgatgcgcctggccatgaagaaggcctccaccctctacaaggagaagctaaaggagggc
ctccgggaccccgacaaggacgtgatggtcatcagcaagttcaacgagaactccacctcg
gacaaaacggacatgacgccctccacggcctccctgccgtcttacaacagcgttacgaaa
tcagacaaggacaagtatgagaaagaaaaaaagcgggaaagacagaaagacgtagacttt
ttaaataagaacaaaaaatag
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