Etheostoma cragini (Arkansas darter): 117948491
Help
Entry
117948491 CDS
T07493
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117948491 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117948491 (cnot1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117948491 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117948491 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117948491
NCBI-ProteinID:
XP_034734010
LinkDB
All DBs
Position
8:complement(20727513..20754528)
Genome browser
AA seq
2415 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LQLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDSKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDTLSGIGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNTNPSTPFGGIGGGSLSSQLPG
MDSGPLGTGIGSVIGSSLGMPPVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYFFGIAALDRF
KNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALA
QVQAQAQSQQPGVPKAPQPGQPSTLVTTATTTTTVAKTPTITRPTPSIFKKDVPPSINTT
NIDTLLVATDQTERIVEPPETVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFR
PQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKSLE
EQLSAPKKEAKPPEEMLPVSTTDFVPFAAPPSTPAATTTTCTTTGPPTPQFSYHDINVYA
LAGLAPHINITVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRK
DFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRE
MMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVL
TYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWAT
DDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKA
VEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNV
EAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLF
HTIETLMRTCAHSRANAPEGHTAEQEQQSLTKTPNETVGCTTTCLPQLMDVVRSNYEAMI
DRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVG
QMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVR
LIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLEL
NAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGW
PMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVI
PPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLD
SYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMST
ITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCM
GQKQAQQVMEGTGAS
NT seq
7248 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttattgctactctgtgttacgccgttgacaatcccctgcac
taccagaagagcttgaagccatcggcccacttgttcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtaatatttgggcttgctttgctcaactccagtaacgcagac
cttcgtggttttgctgcgcagttcatcaagcagaaacttccagacctcctgcggtcatac
gttgacgcagatcttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ttgcagttactgctctcgcatctactgtttggccagaagggagccagtggggtagggcag
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtcttgatgaatgcagaaacataatccttcagtat
ggggtgagggaggtcactgccagccaggtagccagggtcctgggcatgatggctcgcacc
cactctggcttaactgatggcatcccactacagtccatctctgctccaggaagcggtatc
tggagtgatagtaaggataagaatgatggctcccaagcacacacgtggaacgttgaagtt
ctcatcgatgtcgtgaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ttggaccacccaggctttctgatccgggacagtaaaggcctgcatatagtggtgtatggc
attcagagggggttgggcatggaggtctttcctgtcgatctcatctataggccatggaaa
cacgctgagggacagctatcattcattcagcactccctaatgagcccagaagtgttttcc
tttgctgattacccttgtcacactgtggccatagacatccttaaggccccaccagaggat
gacaacagggagattgccacctggaaaagtctggacctggtggagagcctgcttaggctg
tctgaggtgggccagtatgagcaggtgaagcagctgttcagctttcctatcaagcactgt
ccagacatgttggtcctggcactgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctgatgcctatcttcctgggcaaccaccctaactcagccattatc
ctgcattacgcctggcatggacagggacagtctccctccatccgtcagttaattatgcat
tcaatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgttgctgaatggtactccatttgcc
tttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccttttatccaggcgtgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggccccagacaaggaccagccaaaaagc
gcccagctgcccccggagaccttagccaccatgctggcctgcctgcaatcctgtgctggg
agcgtgtcccaggagctgtctgagacgatccttaccatggttgcaaactgcagcaatgta
atgaataaagcccgacaaccaccaccaggggtgatgccaaagggacgtgctcccagcacc
agcagcctggatgccatctctcctgtacagatggacactttgtctggcattggttccttg
aacctgggaggcacagccacctctcacactcaaagcatgcaaggtttcccgacctcgctg
agttcggctttcagtaatccccagtccccagcaaaagccttcccaccactctccaacacc
aaccccagcacaccatttgggggcattggggggggcagtctgtcctcgcagctccctggt
atggactctggtcctttgggcacaggcatcggctctgttattggttccagtctggggatg
ccaccggtaaacacagacccttttggcaccaggaagatgagcacaccaggcctgaaccca
cctacctttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcactttagc
aaggagatagacgacgaagcaaacagttattttcagcgtatctacaaccatccacctcat
ccaactatgtctgtggatgaggtactggaaatgctgcaaagattcaaggattcaaccatc
aagcgggagcgagaagtgttcaattgcatgcttcgcaacttgtttgaagaatacagattc
ttcccccaatacccagacaaggagctgcacatcactgcctgcctttttggtggcattatt
gagaagggtcttgtcacctacatggccctgggcttggccctccgctatgttcttgaagcc
ttaagaaaaccctatggatccaaaatgtatttctttggaattgctgccctagataggttt
aaaaacagactaaaggactatcctcaatattgtcaacacttggcttcaattgcccacttc
ttgcaattcccccaccatttacaagagtgtgtgcagtatatcgagtatggccaacagtca
cgggaccctccggtgaagatgcaaggctccatcaccacccctggcagtctggcactggca
caagtccaagcacaggcccagtcacagcaacctggtgtccccaaagccccacagccaggt
cagcccagcactctagtcaccaccgccacgactacaaccacagtagccaagacccctacc
atcaccagaccaacacccagcatcttcaagaaggatgtccctccctccataaacacaacc
aacattgacacactgctggtcgccactgaccaaacagaaaggatcgtagagcccccagag
actgtccaggagaagattgcgtttatcttcaacaacctttctcagtccaacatgacacag
aaggttgaagagttgaaagaaacggtaaaggaagagtttatgccgtgggtgtcccagtac
ctggtgatgaagcgtgtcagcattgagcccaacttccacggtctttactcaaactttctt
gacactcttaagaaccctgagtttgtgaagatggtcctcaatgagacgtacaggaatatc
aaggttctgttgacatccgacaaggcagctgccaatttctctgatcgctccctactgaag
aacttgggccactggttgggcatgattacactggccaaaaacaagcctattctttacaca
gatctggaagtcaagtctctgctactggaagcctatgtgaaaggccagcaggagctactg
tatgtggttccctttgtggccaaagttttggagtccagtctacgaagcatggtcttcagg
ccccagaacccctggaccatggccatcatgaatgttctcgctgagctgcatcaagaacat
gacctcaagctgaacttaaagtttgagattgaagttctgtgtaagaacttgtctttggac
atcaacgatctaaagccaggaaacttgctgaaggacaaagataagctgaagagtttggag
gagcagctgtcggcaccaaagaaagaggcaaagcctccagaggagatgctgccagtgtct
accacagactttgttccgtttgcagcccctccctcaaccccagctgccaccaccaccact
tgcacaaccacagggccccctaccccacagttcagttaccatgacatcaatgtgtatgcc
ttggcaggtctggctccacacattaatataactgtcaacatccctctgctacaggcccat
cctcagttgaagcagtgtgtacggcagtcagtagagcgagctgttcaggagctggtacac
cctgtggttgaccgctctatcaaaatagccatgacaacctgtgagcagatcatccggaag
gactttgccctagattcagaggagtcccgcatgcgtgtggctgcccaccacatgatgaga
aacctgactgctggcatggccatgatcacctgccgggagcccctgctcatgagcatcgcc
accaaccttaagaacagctttgctgctgcactaagggccccaaccccccaacagagggag
atgatggaagaggctgcagccaggattgctcaagacaactgtgaattggcttgctgcttc
attcagaaaacagccgtagagaaggctggccctgaaatggacaagagactagccacggag
tttgagctgaggaagcatgcacggcaagagggacgtcgttattgtgaccctgttgttctg
acgtaccaggctgaacgtatgcctgaacagatcagactcaaggtgggaggagtggacccg
aaacaacttgctgtatatgaggagtttgccaggaacgttccaggtttcttacccagcaat
gatctctctcaacccactggcttcttggctcagcccatgaagcaacaggcatgggccaca
gatgatgtggctcagatctatgataagtgcatggcagacttggagcaacatcttcacgcc
atccctccagccctggccatgaacccgctgacccaggctctgcgcagcctgctggaagcc
gtggccttggctaggaactccagggacggcattgccgcacttggccttctgcagaaggct
gtggaaggtcttctggatgctactagtggtgctgatgcagacttgctgctccgatacagg
gagtgccacctgctggtgcttaaagccctacaggatggacgggcctatggaccacagtgg
tgcaacaagcagatcaccaggtgtctgattgaatgccgtgatgagtacaaatataatgta
gaggcagtggagcttttgatcaggaaccatctcgtcaatatgcagcagtatgacctgcac
ctggcacagtcaatggaaaacggactgcactatatggccgttgcatttgccatgcaattg
gtgaagctcctgctggtggatgaacgcagtgtcagccatgtcacagaggctgacctcttc
cacacaattgaaactttaatgaggacctgtgcgcactccagagccaacgcacctgaggga
catacagcagaacaagaacagcaaagcttaacaaagacaccaaatgagacagtggggtgt
acaacaacttgccttccccagctgatggatgttgttcgctccaactatgaggccatgatt
gaccgggcccacggaggacccaacttcatgatgcactctgggatttcacaggcttcagaa
tatgatgatcctccaggcctgagggagaaagccgagtacctcctgagggaatgggtcaac
ctgtaccactcagctgctgctggcagggacagcaccaaagctttttctgcatttgtcggc
cagatgcaccagcagggcatcctgaagaccgatgacctgatcaccaggttcttccggctg
tgcacagaaatgtgtgtggagataagctatcgggcacaggctgagcagcagcacaaccca
gcagccagtgcagccatcatcagagccaagtgttaccacaacctggatgcctttgttagg
ctcatagccctgcttgtcaaacactctggagaggccaccaacacagtgacaaaaatcaac
ctcctcaataaggttctgggtatcgtcgttggggtgctgattcaggaccatgatgtccgt
cagacagaattccaacagctgccgtaccaccgcattttcatcatgctgctgttggagctc
aacgctcccgaacatgttttggagaccatcaacttccagacactcactgccttctgcaac
accttccacatcctgagacccaccaaagcacccggctttgtgtacgcctggttggaactg
atctcccatcgtatcttcatcgccaggatgctagcacacacaccgcagcagaagggttgg
cccatgtatgcacagctgctgattgatctcttcaagtacctggccccattcctgaggaat
gtagagctcaacaaacctatgcaaatcctctacaagggcacactgcgggtgctcctggtc
ctgctgcacgacttcccagagttcctgtgtgactaccattacggcttctgtgatgttatc
ccacccaactgcatccagcttcgcaacctcatcctcagtgcctttccacgcaacatgagg
ctccctgaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacattgct
ccccgtatcctcaccaacttcacaggcgttatgccttcccagttcaagaaggacctggac
tcgtatctgaagactcgctccccagtcaccttcttgtctgagctgcgcagcaacctgcag
gtgtccaacgagccaggaaaccgctacaacatccagctgatcaatgctctggtgttgtat
gtaggcacacaggcaatcgctcacatccacaacaaaggcagcaccccctccatgagcacg
atcacccactctgcacacatggacatcttccagaacctggccgtggacctggacactgaa
gggcgttacctgttcttgaacgcgatcgccaatcagctgcgctaccccaacagccacact
cactacttcagctgcaccatgctctatctgtttgctgaggccaacaccgaggccatccag
gagcagatcaccagggttctgttggagaggctgatagtgaacaggcctcacccatggggt
ctcctcatcaccttcatcgagctgatcaagaaccctgccttcaagttctggagccacgac
tttgtgcactgtgcccctgagattgaaaagctgttccagtcagtagcccagtgctgcatg
ggacagaagcaggcccagcaggtgatggagggcactggtgccagctag
DBGET
integrated database retrieval system
