Etheostoma cragini (Arkansas darter): 117951841
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Entry
117951841 CDS
T07493
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10b isoform X1
KO
K16499
protocadherin delta 2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117951841 (pcdh10b)
Cell adhesion molecules [BR:
ecra04515
]
Cadherins
Protocadherins
117951841 (pcdh10b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
117951841
NCBI-ProteinID:
XP_034739676
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All DBs
Position
10:complement(10033646..10058738)
Genome browser
AA seq
1022 aa
AA seq
DB search
MIVLLIALCITDGVLSQIRYSVPEEADHGTLVGNIAEDLGLDLTKLASRRFQVVPSSRTP
YLEVNLENGVLFVSEKIDREQICKQSASCQLNMEVFLENPLELFRVEIEVVDINDNPPSF
PETDITVEISESATPGTRFPLESAFDPDVGSNALRTYDITTNNYFYLDVQTQTDGNKFAE
LVLEKPLDREQQAAHRYVLTAVDGGQPPRTGTALLVVRVLDSNDNVPVFEQPVYTVSLSE
NAPAGTLVIQLNATDLDEGQNGEIVYSFSNHISSRVKDLFSIDARTGRIEVRGEVDFEES
SLYQIFVQAKDLGPNAVAAHCKVLVKVSDANDNAPEITFSTVTESVSEAAAPGTVIALLS
VTDRDAEENGQVHVEILGDVPFKLKSSFRNYFTIVTDGPLNREHADSYSVTVVARDKGTP
SLTASKSIRVQVSDENDNAPTFTQSVYDVYVTENNVPGAYIHAVTALDPDAGQNALISYS
ILECDIQGMSVKTYVSINEETGYLYALRSFDYEQLKDFTFTVQARDAGSPQLSSNATVKV
IIVDQNDNAPLVLAPLGKNGTAREPLPRSAEPGYLVTRIVAMDADDGENARLSYSIQRGN
ENGMFRMDWRTGELRTARRVSVKRDPQQMYELLVEVRDHGQPPLSSSASVLVLLVDSVAE
GRGAGDRAGTAKAKEGTLDLTLILIIALGSVSFIFLLVMIVLAVRCQKDKKLNFYTCLAS
ECCLGCSSCCSRQARARKKKLSKSDIMLVQSAGSVSGAGGTAQVPVEESGSFGSHHQNQN
YCYQVCLTPESAKTDLMFLKPRSPSRSTDTEHNPCGAIVTGYTDQQPDIISNGSILSNET
KHQRAELSYLVDRPRRVNSSAFQEADMVSSKDSGHGDSEQGDSDHDATNRGHSSGADLFS
NCTEECKALGHSDRCWMPSFVPSDGRQGPDYRSNLHVPGMDSVPDTEVFESPAQTADKSF
STFGKETPLSHQHLHHHLHHNPLKNHHLSQHQGSLQGTELEAFVPSSRAPFNPAYLTRKR
VC
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgattgttcttttgattgccctgtgcataacggatggagtgctctctcaaatacgctac
tcggtgccggaggaggcggaccatggcacactggtggggaatatcgccgaggacctgggg
ctggaccttaccaaacttgcgtcccgccgcttccaggtggtgcccagctctcggacaccg
tacttggaggtgaacctggaaaacggcgtgctgttcgtgagtgaaaagatcgaccgggag
cagatctgcaagcagagcgccagctgccagcttaacatggaggtgttcctcgagaacccg
ctggagcttttccgcgtcgaaattgaagtagtggacattaacgacaacccgcccagcttc
ccggagacagacatcaccgtggagatctcggagagcgccacaccgggcacccgcttcccg
ctggagagcgctttcgacccggacgttggctcgaacgctttacgcacgtacgacatcacc
actaacaactacttctacctggatgtgcagacccaaacggacgggaacaagtttgcggag
ctggtgttggagaagccgctggaccgggagcagcaggcggcgcacaggtacgtgctgacc
gcggtggacggtggccagccgccgcgcactggcaccgctctgctggtggtccgggtgctc
gactccaacgataacgtgcctgtgttcgagcagcccgtgtacacggtgagcctatcggag
aacgcaccggcgggcacgctggtcatccagctcaacgccaccgacctggacgagggtcag
aacggtgagatagtctactccttcagcaaccacatctccagccgcgtcaaggacctgttc
agcattgacgcgcgcacggggcgcatcgaggtgcgcggcgaggtggacttcgaggagagc
agcctgtatcagatctttgtgcaggcgaaagacctggggccaaacgccgtggccgcgcac
tgcaaagtgctggtcaaagtcagcgacgcgaacgacaacgcgccggagatcaccttcagc
accgtgaccgaatcggtgagcgaggcggcggccccgggcacagtcatcgcactgctgagc
gtcacggaccgggacgcggaggagaacggtcaggtgcacgtggagatcctcggcgacgtc
ccgttcaagttgaaatcctcctttaggaattatttcaccattgtgaccgacggtccgctg
aaccgcgagcacgcggactcctactccgtgacggtggtggcgcgggacaaagggacgccg
tcgcttaccgccagcaagtccatccgagtccaggtgtcggatgagaacgacaacgcgccc
acctttacgcagtcagtctatgatgtgtatgtgacagagaacaacgtgccgggcgcgtac
atccacgctgtgaccgctctggacccagacgccgggcagaacgcgctcatcagctactcc
atcctagagtgtgacatccagggcatgtcggtcaaaacctacgtgtccatcaacgaggag
acgggctacctttacgcgctccgctccttcgactacgaacagctgaaggacttcacgttc
acggtgcaggcgcgcgacgcaggcagcccgcagctctcctctaacgccacagtcaaagtc
atcatcgtggaccagaacgacaacgcgccactggtactggccccgctggggaagaatggc
accgccagggagccgctgccccgctccgccgagccgggctacctggtgacgcgcattgtg
gcgatggacgcggacgacggcgagaatgcgcggctgtcctacagcatccagagagggaac
gagaacggcatgttccggatggactggcgcacgggggagctgcgcacggcgcggcgggtg
tcggtgaagcgcgacccgcagcagatgtacgagctgctggtggaggtgagggaccacggg
cagccgccgctgtcctccagcgccagcgtgctcgtgctgctggtggacagcgtggcggag
ggccgcggagccggggaccgagcgggcaccgccaaggccaaggagggcaccctggatctg
accctgatcctcatcattgccctgggctccgtctccttcatcttcctgctggtcatgatc
gttctggctgtgcgctgccagaaggacaaaaagctcaacttttacacctgcctggccagt
gagtgctgcctgggctgcagctcgtgctgctcgcggcaggcccgcgcgcgcaagaaaaag
ctcagcaagtcggatatcatgctggtgcagagcgctggcagcgtaagcggggccggtggc
acggctcaggtgcccgtggaggagtcagggagcttcggctctcaccatcagaaccagaac
tattgctaccaggtatgtctgactccagagtctgccaaaaccgacctcatgttcctaaag
cctcgtagtccgtctaggagcacagacaccgagcacaacccgtgcggggccatagtgaca
gggtatacagaccagcagcctgacatcatatcaaatggcagcattttatcaaacgagacc
aaacaccagcgagctgaactcagctacctggttgacaggccgagacgtgtcaacagttcg
gcgttccaggaggccgacatggtcagctccaaagacagcggccacggggacagcgagcag
ggagacagcgaccacgacgccaccaaccgaggccattcctccggcgccgaccttttctct
aactgcacggaggagtgtaaggcgctgggccactcggatcgctgctggatgccgagcttc
gtgccctccgacgggcgccagggcccggactaccgcagcaacctgcacgtgcccggcatg
gactcggtcccggacacagaggtatttgaaagccccgcgcaaacggccgataagtcattc
tccacctttggcaaagagacgcctctcagtcaccaacacctccaccaccacctccaccac
aaccctctcaaaaaccatcacctcagccagcaccagggctccttacaggggacagagttg
gaagcatttgtgcctagctccagagcgccttttaacccggcttatttaacgaggaaaagg
gtttgctag
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