Etheostoma cragini (Arkansas darter): 117952542
Help
Entry
117952542 CDS
T07493
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117952542
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117952542
09142 Cell motility
04820 Cytoskeleton in muscle cells
117952542
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117952542
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117952542
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117952542
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117952542
Hyaluronan
Extracellular matrix or blood plasma proteins
117952542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
SPOR
DCX
Motif
Other DBs
NCBI-GeneID:
117952542
NCBI-ProteinID:
XP_034740787
LinkDB
All DBs
Position
11:complement(1448388..1497190)
Genome browser
AA seq
3178 aa
AA seq
DB search
MKRHRLLPLCALLGVLFAGLLPHLEAQEDCAQGLGADVYFLVDSSWSMGEENFKHVRQFL
SSLIQSLHQVGGERFKFALVQYSTEPQTEFQLNRYPTTQGVLAHIEAMPYRGGGTQTGLG
LDFLTRTHMTTASGSRAVDGVPQVVVVLTDGRSQDDVAEPAQVLWLAGVEVFAVGVQDAV
DSGLRDMASKPYDSHVFSVDSFLTLGDIIQDLAVGLCDAVTRSGGGPVANKAPVSGGGTA
HDSADLVLLIDGSENVGAANFPFVRDLVLRIIEPLDVGRDTVRVALALYNGNPQIKFYLN
SYDSKSSVLEAVKGLSYSGGDESNLGLAMEEVASSLLSETAGGRADEGVPQMLVVISAGP
STDDTGAGDRALKRARVITFGVAIGDTARADLEAVATDKSFVLSASDVRTVAPIGDQLLP
FINGGVQRTITVQHEFTEVVQVGQRDIIFLIDSTMGATLINSVREFIKRFVDIMPIGPDG
VQVGVALFSNAPRLEIDLNSYGSREELTAALGAIKPRPGQTVNIGAALDFVRTNMLRPER
GSRIQQGIPQLLMLLTSKKSSDSVEEPALALQRLGVLTLAVGSKTATENELRQIAFADSV
AFFLKDLRALLRNPKAIVDALSTLAGVVVTETPTEPVVEITTVQTQKVVRDIVFLVDGSN
YIGSSNFPYVRDFIINVVNQLDVRPDRVKIGLLQFAESPKIEFYLNSYSNREDVVNKISQ
LRLTGGSVLNTGAAMNYALANMFQPSTGSRRKQGVQQVLVLITGGPVQDQAKNAADRLAL
AGVLTFTVSSGQADEALMKTVAFVEDLAYHETSFSYLPALAEQIMPKLITVVGDTDVTET
SFPDETDVVVGGERDVAFLIDGTENVRRDFAYIRDFILKVIEPLDVGIDRVRVSVVQHSE
RPTPTFYLNSYQTKDEVKRAVTEMTLAGGRTLNTGAALRFMKDTILSESYGSRASQNVPQ
FLIVLAAGRSRDSVKDSAGALKTDGVVPFGVGVKDADPKQIGEISHNPSFAFNVREFSEL
STVTQRLNNYVSLPSEELTTVLREGETQGPRKDVVFLVDGSTGVGREFPIIQEFIRRVVE
SLNVGENKIRIGVVQYGDSPHADIFLNTHTTKEGVLNAVKGIRQRGGRQRNLGQALQFVG
QDVLTAARGGRKQDGVPQFVIVVSSGSSTDDINTAATSLKQSRVLPFSIGTRDVNPKELQ
VVSYVPNFVFTVDDLPGLYTVQENIINTLTELSDEDITRMRPVFPDIDVIPPATTEGEKR
DVVFLVDGTTATRSEFPSIREMIRRVVDKLDVGLDKIRISVVQYSDDPKLEFLLNAFSTK
EEVRQAVMKLRSKGGNRLNTGRALEWVYRNIYQRSAGSRIEDGVPQFLILVTGGKSADDV
STAADQLKRNQVAPLAIGSRDADPDELRQISLKPELVYTVDSFQQLPRVESQLIDSVKTI
STSDIISSYVPTSVDLGNLSLGKKDIIFLIDGSDSTGTAGIAHIRDFILSIVRQLDVQPD
QVRVGVVQYADRVKTEFSLNSHNNKPAVVSAIQRLRQMGGRASHLADAIDYVINQEFKPA
AGVRQTEASQHLVVLTGQKSPQDVSIYGPLLKGTRVNCIGVGAAGADKRQLTQIATTPAD
VLQVSNFNGLPAVQQGVIERLSGTIIEEPPTDFEDPSLPTPKKADIVFLVDGSINLGRDN
FNEVMSFISNLIDLFFTERDNLRIGLAHYTADVTDVFYLNTYKNKEDIVNAIGRAEYKGG
RRLNTGAAIRHVQDVHFTKEKGSRIDERTPQILMVVTGGRSADDGKTAALGLKKKGVRVF
AVGVGDIENELEDLASESSTVARASTFLGLSELNEQILETLDDEVKGKLCVSVPETSKTC
SIEVLLGFDVAAQNIFSAQTNLQKNMEAILKRIPKLAAISCSSGQIPTVQMGILAMDSAS
EPIQLDFTDNAEELIRDFKALGNRGPFVLNGKTISAYTNRFKNRQDDVVKIVVHLTDGID
APYVEMKRRVEELRLSGVNSFILVGLERVSQFDEALLLEFGRGFRYTRPLRLNIMDLDYE
LMEELDHIAERVCCAVPCKCTGTRGDRGAVGLSGPKGSPGGPGSQGHPGDEGGPGERGPP
GVNGTQGFQGCPGQRGVKGSRGYSGEKGESGEIGLDGINGEEGKSGVAGPPGDRGNPGKR
GPKGSKGQAGDIGEIGIRGDPGTSGRDNNVPGPKGDPGDAGPPGAPGEDGNKGGAGELGR
RGANGRRGSPGLAGQPGKPGDEGLQGEPGIGGSRGPSGPIGVPGPRGEDGNPGPRGPGGS
PGPAGEKGRRGFLGRKGEPGDPGPKGSVGPLGPRGEPGDDGRDGFGVAGPKGRKGDEGFP
GFPGPKGLAGDPGTKGGPGRRGNHGQRGVSGNIGTPGPKGEVGYPGPDGEKGPRGPGVVQ
CDLVKKIRENCPCCYGQQECPLYPTELAFALDASGDVDRSAFNNMRDTVLRLVRDITISE
SNCPRGARVAIALYNEEVTTEVRFAEAKRKRALVQHIEGLQTLKTRKPRSLDTSMSFVAQ
NIFKRVRSGFLMRKVAIFFVGGAVSKPREITNAALRLHNAGIASLFLVNRDDRALSKALQ
VNNTALGQVIVLPNPGSAQYNSVIQKVMNCHVCLDVCSPDQTCDYVPPSVGRDRRSSTTD
VDIDMVFVMDSSKSTYPTVFTEIKRYIAHIVEQLQVSSNPTSSIHHARVAVIQQAPYEFI
NNKTGLPIRVDIGLTEHHSAQDIVKFLLEKTPQLEGGRALAAAIESTVEQVFEKAPAQRD
RKVLMLFVTGSVEEEEEQLVRIATEVKCRGYFLVIMGVGKGLSAGDARVFSRMASEPSDV
FFKRLDSVSHFYEKHIQTFGQLLPKYISIENAFYMSPEVSKNCKWFQNDQPLKNPFTTSH
QQEKHQKHHEDHQAVHQSKHKHAEELHVSNVTSSSLKLRWTNPDSKLFVYFEVVVTRLHD
HALVLKTNVSGTELSVDNLESAQTYHAVVTAHTAEGQTVSTRKGIMTTKAAEPKPDHKPV
SPGSSVVNTEPLDQPETVTVFADPCSLDYDPGMPCKDYQAKWFFDRQNGICTQFWYGGCE
GNENRFDTEALCLKNCMRSVSEPQPRLQQVEQVEIFPSPASLTAASTAVDICQLPKEEGT
CAKFVLKWHYDVSSKSCTRFWYGGCGGNQNRFDTHQQCVSACGKPAPLSQGVITTIRT
NT seq
9537 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcatcggttattaccgctatgtgccctcctaggggtcctgtttgcaggactc
ctccctcaccttgaggctcaggaagattgcgcgcaggggttgggagctgatgtatacttt
ctagtggattcatcctggagtatgggagaggagaactttaagcatgtcagacaatttctg
tccagcttgatccaatcactgcaccaggttggaggggagaggtttaaatttgcccttgtg
cagtacagtaccgagccacaaactgagttccagctcaaccgctacccaacaacacagggg
gtcctggcacacatcgaggctatgccttatcgtggtgggggaacccagactggcctgggc
ctggatttcctgactcgtacacacatgaccactgcgtcgggcagccgcgctgttgatggc
gtgccccaggtggtggttgtgctgacagatgggcgctcccaggatgacgtggccgagccg
gctcaggtgctgtggctggcaggcgtggaggtgtttgcagtcggagttcaggatgcagtt
gattcggggctcagggacatggctagcaagccctatgactctcatgtgttcagtgtagac
tctttcctgactttgggggatataattcaagatttagcggtggggctttgtgacgcagtg
acccggtcagggggtggtcctgtggcaaacaaggcccccgtgtctggaggagggacagca
cacgattcagctgacctagtgctcttaattgatggatcagagaacgttggagcagcaaac
ttcccctttgtgcgcgatttggttttgagaatcattgagccccttgatgtgggcagggac
actgttcgggtggccttggccctgtacaacggcaacccacagataaagttctatctaaat
agctatgacagcaaatcatcagtcctggaagcggtgaagggcctttcctactcagggggc
gatgaatctaacctggggttggccatggaggaagtagccagcagccttttaagcgaaaca
gctgggggcagggctgacgagggtgtgccccagatgttggtggttatcagtgctgggccg
tccactgatgatactggtgccggtgaccgggcccttaagagggccagagttatcacattt
ggtgtggcgattggtgacacggccagagcagatctggaagcagttgctacagataaaagt
tttgtcctgtcagccagtgatgtcagaacagtggcgcccataggtgaccagctgctcccg
ttcattaacgggggggtccagcgcaccattacagttcagcacgagttcacagaagtggtg
caagttggacaacgagacatcattttcctcatcgacagtacaatgggtgcaacgcttatc
aactcggtgcgagaattcatcaagcggtttgtcgacatcatgccgattggtccagacgga
gtccaagtgggtgtggccctgttcagcaatgcccctcgacttgagattgatctcaactcc
tatggatccagggaggaactaactgctgctttgggtgcgatcaaaccaagaccgggtcag
accgtcaacattggagcagccttggacttcgtgcggacaaatatgctgcggcctgagaga
ggcagtcgtatccaacaggggataccccagcttttaatgttgttgaccagtaaaaagtcc
agtgacagtgtggaagaacctgctttggccctgcagcgactgggcgtgttgactctagct
gtgggttccaagaccgcgacggagaacgagctgcggcagattgcctttgctgatagtgtt
gcgttcttcctgaaagacctacgagcgctgcttcgcaacccaaaggccattgttgatgcg
ctctccactctagctggggtggtggttactgaaacgcccactgagccagtggtggagata
accacagtgcagactcaaaaagtggttcgagacattgtcttccttgtggatggatccaac
tacattggcagcagtaactttccctatgtgagagatttcatcatcaacgtggtcaaccag
ctggatgtacgtcccgacagggtcaagattggtctcctgcagtttgccgagagcccaaaa
attgaattttatctgaacagctacagcaacagggaagatgttgtgaataaaatctctcaa
ctcaggctgactggaggctcagttttgaatacaggagctgccatgaattatgcccttgcc
aacatgttccagccatcaactgggtcacgtaggaagcagggagtccagcaggtattggtt
ctgatcacaggtggtccagtccaggatcaggctaaaaatgcagctgatagattggctctt
gctggtgtcttgaccttcacggtcagttctgggcaagcagatgaagccctaatgaaaaca
gttgcctttgttgaagatctggcttaccatgaaacaagcttctcatatttgccagctctg
gctgaacaaataatgccaaagttgataacagtggttggcgatacagatgtgacagaaaca
tcattccctgatgaaactgatgtggttgttggaggagaaagagatgttgcctttctcatt
gatggcacagaaaatgtcagaagagattttgcctacatccgagattttatccttaaagtc
atcgaaccacttgatgttgggattgacagggtgcgagtttcagtggttcaacacagcgag
aggccaactccaactttctaccttaactcttatcagaccaaagatgaggtgaaaagagcg
gtcacagaaatgacattggctggtggacgtactctcaacacaggagctgctctgagattc
atgaaggacaccatcttgtctgaaagttatggtagccgcgcttcacaaaatgtccctcag
ttcctgatcgttttggctgcaggcaggtccagggacagtgtaaaggattcggctggtgcg
ctaaagacagacggagtggtaccttttggtgttggtgtcaaggatgcagacccaaaacag
attggggaaatttcacacaacccttcctttgccttcaatgtgagggaattcagcgagctg
agcaccgtcacacaaaggctcaacaactacgtgagcctaccaagtgaagagctgaccaca
gttctacgggaaggtgagacccagggcccccgaaaggatgttgttttcctcgttgatgga
tctacaggtgttggacgggaatttcctatcatccaggagtttattcgcagggtggtggag
agtctcaatgtgggcgagaacaagatccggatcggtgtcgtccagtatggtgactctcct
catgctgacatatttctgaacacacatacaactaaagaaggtgttttgaatgctgttaag
ggaatcaggcaacgaggaggaagacaacgtaacctgggacaggccttgcagtttgtcggt
caggatgttctgacggcagcacgtggcggcaggaagcaagacggtgtaccgcagtttgta
attgttgtctccagtgggtcttcaacagatgacatcaatactgcagcaacttccctcaaa
caatctagagttcttcccttcagcattgggacgagggatgtcaaccctaaagagctccaa
gtggtatcatacgtgcctaactttgtcttcactgtagatgacctccctggcctgtacaca
gtccaagaaaacataattaacactctcactgaactgtcagatgaggacatcaccaggatg
cgcccagtattcccagacattgatgtaatcccaccagcaaccacagaaggagaaaagagg
gatgtcgtatttttagttgatggcacaacagcaacgcgcagtgagtttccttccatccgt
gaaatgataagaagagttgtggataagctggatgtaggattggataagatccgaatttca
gtggtacagtacagcgatgacccaaagttagaatttcttctgaatgcattctccaccaaa
gaagaggtacgccaggctgtgatgaaacttcgaagcaaaggtggaaaccgtctaaacaca
ggtcgtgctctcgagtgggtctacagaaacatctaccagaggtcagcaggaagccgcatt
gaggatggtgtacctcagttcctcattctagttacaggtggcaagtctgcagatgatgta
tccaccgcagctgaccaacttaagagaaaccaggttgcacctcttgccattggatcaagg
gatgctgaccctgacgaactgagacagatttccctgaagcccgaacttgtatatacagtt
gacagtttccagcagcttcctagagtggagtcacagctcattgattcagtaaaaacaata
tccaccagtgatatcatcagtagttatgttcctacatcggtggatttaggtaatctgagt
cttggaaaaaaggacattatcttccttattgacggctcagacagtacagggactgctggc
attgctcatatccgtgacttcatcctcagcattgtccgacaactcgatgtgcagcctgat
caagtgcgtgtgggtgttgtccagtatgccgacagagttaaaacagagttctctctcaac
tctcacaataacaagccagctgttgtctctgctattcaaagacttcgtcagatgggtggc
cgggcatcacatctggctgatgccattgactatgttataaaccaggagtttaaacccgct
gctggtgtccgtcaaactgaggcctcccagcatcttgtggttctcacaggtcaaaaatcc
ccccaagatgtttctatctatggacctctgcttaagggcacccgggtcaactgcattggt
gttggagctgctggtgctgacaaaagacaactaacccaaattgccaccactccagctgat
gtcctccaagtttctaacttcaatggcctgccagcagtccagcagggggttattgagagg
ttgagtgggactataatcgaggaaccacccactgactttgaggatcctagccttcctacc
cccaaaaaggctgatatagtgtttttggtggacggctctattaacttgggcagagacaac
ttcaatgaagtgatgtcgtttatcagcaacctaattgatctgttcttcaccgagagagac
aacctgcggattggcctggcgcattatacagcagatgtgactgacgtcttctacctcaac
acctacaagaacaaggaagacattgtaaacgccattggccgagcagagtacaaaggtgga
cgtagactcaacactggtgcagccattcgccacgttcaagatgttcactttaccaaagaa
aaaggcagtaggatagatgagcgcactcctcagattcttatggttgtcactggaggacgt
tcagctgatgatgggaaaacagcagccctgggtctcaagaaaaaaggtgttagagtcttt
gctgtaggcgtgggtgacattgagaatgagttagaagacctggcaagtgagtcctccacg
gtggcgagagcaagcacctttctaggactttcagagctcaatgagcaaattctggaaact
ttggatgatgaagtgaaagggaagctgtgtgttagtgttccagaaacttcaaaaacctgc
agcatagaggttttgctgggctttgatgttgctgcccagaatattttcagcgctcagacc
aacctccagaaaaatatggaggccattctgaagaggattcctaaattggcagccatcagt
tgctcatctgggcagattcccactgtgcaaatgggcatactggccatggactctgcctct
gagcctatccagctggacttcactgacaatgctgaggagctcattagggacttcaaagcc
ctcgggaatcgtggcccctttgtcctcaatggcaagactatctcagcttacaccaatagg
ttcaaaaacagacaggacgacgttgtcaagattgttgttcatctgactgatggtattgac
gccccatatgttgaaatgaaaaggcgagttgaggagcttcgactgtcaggagtgaacagt
ttcatcctggtcgggctggagcgggtttcacaatttgacgaggctttgctgctggaattt
ggtcgcggtttcaggtacacaagacccttacgactcaatatcatggacttggactatgag
cttatggaagaactggaccatattgcagaaagggtttgctgcgcagtgccatgcaaatgt
actggaaccagaggagaccgaggagcagttggactttcagggcctaagggtagcccggga
ggaccaggaagccaaggacatcctggagatgagggtggacctggagagagaggtcctccc
ggcgttaatggaactcagggtttccagggatgtccgggacaaagaggtgttaagggttct
cgtggctactcaggagaaaagggtgaatctggagaaatagggcttgatggcatcaatggc
gaagagggcaaaagtggagtggctggacccccaggagacagaggaaaccctggcaaaaga
ggtcccaaaggtagcaaaggacaagcaggagacataggagaaattggaatcagaggagac
cctggtacaagtggacgagataacaacgtcccaggacctaaaggagaccctggtgatgcc
ggaccaccgggagcgcctggcgaggatggaaacaaggggggcgctggtgaactcggaaga
aggggagctaatggcagaagaggctcgcctggactggctggacaacccggaaagccagga
gatgaaggtcttcagggagagcctggtattggaggatctagaggtccatccggaccaatt
ggtgtaccaggaccaagaggagaagatggaaaccctgggcccaggggtcccggaggaagc
ccgggtcccgctggagaaaagggtagaagaggatttctcggacgcaagggagagccagga
gatccaggacctaagggctctgttggacctcttggtcctcgtggagagcctggtgatgat
ggtcgagatgggtttggcgtcgcaggtcctaaaggcagaaagggtgatgagggcttccca
ggattcccaggaccaaagggactggctggtgaccctggcaccaagggtggacctggacgc
agaggaaatcatggacagaggggtgtctctggaaatattggtacacctggaccgaaggga
gaggttggatatcctgggcctgatggggagaaaggaccaagaggacccggtgttgtgcaa
tgtgacctggtgaagaagatcagagaaaactgtccttgctgttatggtcagcaggagtgc
ccgctctaccccactgagctggcctttgccctggatgcctctggcgacgttgaccgctca
gccttcaacaacatgcgtgacacagtcctgcgcctagtccgagacatcaccatctccgag
agtaactgtccaagaggagctcgcgtcgctatagctctttacaacgaagaagtgaccact
gaggtccgctttgctgaagcaaagaggaaacgagccctggtgcagcacatcgaggggctg
cagaccctgaaaacccgcaagccgcgcagcttggacacttccatgagctttgtggcccag
aacatcttcaagcgagtgcgcagtggcttcctaatgaggaaggtggccatcttctttgtt
ggtggggcggtcagtaagccacgagaaattactaatgcagctcttcgcctccataacgct
ggaattgcctctctgttcttggttaaccgggacgacagagcactcagcaaagcactgcag
gtcaacaacacagcactgggccaagtaatcgtcctcccaaacccgggaagtgcacagtac
aactcagtcatccaaaaggtgatgaactgccatgtgtgtctagatgtctgctctccggat
caaacatgtgactatgtgcccccatcggtcggcagagataggaggtcttctaccacagac
gtggacatcgatatggtctttgtcatggacagctctaagtctacatacccaaccgtcttc
accgagattaagcgctacatagcgcacatagtggagcagctacaagtctcttcaaatccc
acatcgtccattcaccacgccagagtggctgtgatccagcaagcgccttacgagttcatc
aacaacaaaactggccttcccattcgtgtggacatcggtttgacggagcaccactcagct
caggacattgtcaaatttctgctggagaagacaccccagttagagggtggccgtgcactg
gcagcggctatcgaatcgacagtggagcaagtgtttgagaaggcgcctgcccagcgtgac
aggaaagtgctgatgctctttgtgacaggaagtgttgaggaagaagaggagcagctggtg
cgaatcgccactgaggtcaagtgcagaggctacttcctggtcatcatgggcgtgggtaaa
gggctgagtgctggagatgctcgtgtcttttcacgcatggccagcgagccatcagatgtc
ttcttcaagcggctggacagcgtctcacacttttacgaaaaacacatccagaccttcggc
cagctgctgccgaagtacatcagcattgaaaatgctttctacatgtcccctgaagtatcc
aaaaactgcaagtggttccagaatgaccagccacttaaaaacccctttacaacatcacac
caacaggaaaaacatcagaaacatcatgaagaccaccaagcagttcatcaaagcaagcac
aaacatgcagaagagctgcacgtctctaacgtcacctccagcagcttgaaactgcgttgg
accaacccagactccaagctcttcgtctacttcgaggtggtggtgacgcggctgcacgac
cacgccctggtgctgaagaccaacgtgtcaggcacagagctctccgtggacaacttagag
agcgctcagacataccacgctgtggtcaccgctcacactgcagagggtcaaactgtctcc
actcgcaaaggcatcatgactaccaaagcggcagagcctaagccagaccataagccagtc
agcccaggctccagtgttgtaaatactgaaccactggaccaaccagaaactgttactgta
tttgcagacccatgctcacttgactatgaccctggaatgccgtgcaaagactatcaggct
aagtggttctttgacagacagaacgggatctgtacacagttctggtatggaggttgtgaa
ggcaatgaaaataggttcgacactgaggctctctgcctgaaaaactgcatgaggtcagtg
tcagagcctcagccaagactgcagcaggttgaacaagtggagatctttccgtctcccgct
tctctaactgcggcctctacagctgtggacatctgccagcttcccaaagaggaaggtact
tgtgccaaatttgtccttaagtggcactacgatgtctccagcaagagctgcacacgcttc
tggtacggaggctgcgggggaaaccagaatcgctttgacacgcatcagcagtgtgtgtcg
gcttgtggaaaaccagcacccctcagccaaggagtcatcactacaataagaacatag
DBGET
integrated database retrieval system
