Etheostoma cragini (Arkansas darter): 117952726
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Entry
117952726 CDS
T07493
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117952726 (scn1laa)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117952726 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
ATP-synt_B
FraC
Motif
Other DBs
NCBI-GeneID:
117952726
NCBI-ProteinID:
XP_034741123
LinkDB
All DBs
Position
11:complement(15490695..15519497)
Genome browser
AA seq
1996 aa
AA seq
DB search
MEQLLVPPGPDSFRPFSRESLKSIESRIAEEKAEKPKGEKKKYNDENKIKPSCDLEAGKS
LPILYGDIPKGMVSTPLEDLDPFYFNQKTFIVLNKGKYIFRFNAAPALYLLSPFNLLRRI
SICILVHSLFSMLIMCTILANCAVMTLSGPPDWAKDVEYTFTTIYTLESLIKILARGFCI
GKFTFLRDPWNWLDFSVIVMAYVTEFANLGSFSALRTFRVLRAFKAISVIPGLKTIVGAL
FQSVKKLANVMILTVFCLSVFALIGLQLFMGHLKQKCVRTIINDNSTLNGISDGNYTNNT
FDWDAYTVDKNNHYYLPGKRDPLLCGNGSEAGRCPEGFSCIRAGKNPDYDYTSFDSFGWA
FLSLFRLMTQDYWENLYQQTLRASGKPYMIFFVLVIFLGSFYLINLILAVVAMAYEEQSQ
ATIKEAQEKEEKFQAMLEQLRRQQEVAQVAATAAAAEGGEASDKAVGPESSSENSKLSSK
SAKERRNRRRKMKEEGKGGDEKVPKSESQDSMKKAHFRFSVDANQLNYDMKCSSAHQSFL
SFRGPLFSSRRNSRTSLFSFRGQAQEVGSENEFADDESSIFEDNLSRRGSLFVPRSCDRR
SSSMSQCSFLLHRLIPPSKIKHSSVDCNGVVSLADGNSLPSSPVGLLLPKAMVDMASIGD
NADTTDTEYGEADGGTHQEFMDFLEGPQARQRVHSIASVITSTMEEFEESRQKCPPFWYN
FAHTFLIWECCPTWLKIKRLVKLIVMDPFGDLTITICIVLNTLFMAMEHYPMSKGFTSML
ALGNVVFTAIFTAEMVLKIIALDPYYYFQERWNIFDAIIVSLSLMELCLEKVGGMAVLRS
FRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKYYKDNM
SKICKQCTPPRLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGTPMCIIVYMMVMV
IGNLVVLNLFLALLLSSFSADNLAATEDDSDMNNLQVAIGRIHKGIAFVKSLLRNSCNSV
CLRTKKKGKGEDKSLDELHKPFGPNGVPNHIIKDFPKNGNGDVTGVDKTGDKYIVSSKSD
DSIMSFINNPSLTLSVPIAVGESDFENLNTEDFSSASSDAAGCHVIVDDDDQSSSSEGST
IDVVPGGEGRDSVDFELEESMEPDACFPDGCVQKFPCCQVNVEVGWWKMWWTLRKTCYNI
VEHNWFESFIIFMILLSSGALAFEDVYIEKRKTIKTMLEYADKIFTYIFILEMLLKWVAY
GYAKYFTNAWCWLDFLIVDVSLVSLVANAMGYSDLGPIKSLRTLRALRPLRALSRFEGMR
VVVNALLGAIPSIFNVLLVCLIFWLIFSIMGVNLLAGKYGHCVNRTSDEDFLPSMVKNKT
DCLKFDKEVARWKNSKINFDNVGLGYLALLQVATFKGWMDIMYAAVDAQSKQEEQPEYEN
NMFMYIYFVVFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLG
SKKPQKPIPRPSNKIQGYIFDFTTKQAFDIVIMVLIWLNMVAMMVETEDQSKQKDNILYW
INVVFIIIFTGECLLKMIALRHYFFTNGWNVFDFIVVFLSIIGVFLSKLIEEYFVSPTLF
RVIRLARIGRVLRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYV
KREAGIDDLFNFETFGNSMICLFQITTSAGWDGLLAPILNKHEDDCNNSTEHPGSLFKGD
CGNPAVGIAFFVSYIIICFLIVVNMYIAVILENFGVATEESTDPLSEDDFETFYEVWEKF
DPHATQFIEYNKLSEFADALDPPLRIAMPNKLELISMDLPMVNGERIHCLDILFAFTKRV
LGEGGEMDILRGQMEERFMASNPSKVSHEPITTTLRRKQEDTSAIIIQRAFKKYVRKHVA
TKALNSSSNNIQKDETHIDKEDLVTDKLQDISSADKSELTPSTAPQPSCNSVTTNGKNKY
EKDKSEKEVEGKDVRE
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atggaacagctgcttgtaccaccaggtccagacagcttccgcccctttagtcgtgagtcc
ctcaaatccattgagagccggatcgctgaggagaaggcagagaagccaaagggagagaag
aaaaaatacaatgatgagaacaagatcaagcccagctgtgacctggaggcgggcaaatca
ctccctattctgtatggggacattcctaaaggcatggtgtcgacaccgctggaggacctg
gatcccttctactttaatcagaagactttcatagtattaaacaaaggaaaatacatcttc
cgcttcaacgccgctcctgccttgtacctcctgagccccttcaaccttctaagaagaata
tcaatttgcatcttggtacactcattgttcagtatgttgatcatgtgcactatccttgcc
aactgtgcagttatgacactgagtggaccgcctgactgggcaaaggacgtagagtacaca
tttactacaatctatacacttgaatccctcattaaaattttagctcgagggttctgcata
gggaagttcacgtttctcagagatccttggaactggctggatttcagtgtcattgtcatg
gcgtatgtaacagagtttgcaaacctaggcagtttttcagctcttcgcacattcagagtg
ctgagagctttcaaagctatttcagttatcccaggcctgaagaccattgttggtgcgttg
ttccagtcagtgaagaagcttgccaatgtgatgatactcaccgtcttctgcctgagcgtc
tttgccctaataggcttacaactgtttatgggccatttaaagcaaaagtgtgtccggaca
ataataaatgacaattccaccttgaatggtatatcagatgggaactacacaaacaacact
ttcgactgggacgcttacaccgttgataagaataatcattattaccttccaggaaaacga
gatccattgctttgtggcaatggcagtgaagctgggcggtgtccagaggggttttcttgc
atcagagcggggaaaaacccagactacgattacaccagttttgactcatttggttgggct
tttctctctctgtttagactgatgacacaggattattgggaaaacctctaccagcagacg
ttgcgggcatctggaaagccctacatgattttttttgtgctggtgattttcctcggttcc
ttctacctgatcaacctgatcttggctgtagtagctatggcctacgaggagcaaagccag
gccaccataaaggaggcgcaggagaaggaggaaaaatttcaggccatgcttgagcagctg
agacggcagcaagaggtcgctcaggtagcagccactgcagccgctgcagagggcggggag
gccagcgataaagctgttggcccagagagctcctctgaaaattccaagctcagctccaaa
agtgctaaagagagacgcaacaggcgaagaaaaatgaaggaggagggcaaaggcggtgat
gagaaggttcctaaatccgagtcacaggacagcatgaagaaagctcacttccgcttctct
gtggatgcaaaccagctcaactatgacatgaaatgctcatccgcacatcagtcttttctg
agttttcgtgggcccctgttctcatccagacggaacagcaggaccagccttttcagtttc
cgaggccaagcgcaggaggtgggctcagaaaatgagtttgccgatgatgagagcagcatt
tttgaggacaacttgagtcggaggggctctttgtttgttccccggagttgtgatcgacgc
agcagcagtatgagccagtgcagcttcttgttgcatcgactgattccacccagcaagatc
aagcacagctctgtagactgcaatggagttgtgtctttggcggatgggaattcactccca
tcgtcacctgtggggcttcttctgcctaaagcgatggtagatatggcctccattggagac
aatgcggacaccactgacacagaatacggagaggccgacggaggaacacaccaggagttt
atggatttccttgagggtccacaggctagacagagagttcatagtatagcaagtgtcata
accagtacaatggaggagtttgaagagtcgaggcagaagtgtcctcctttctggtacaat
tttgcccacaccttcctcatctgggaatgttgtccaacatggctgaagatcaagaggctg
gttaaattaattgtgatggatccatttggggaccttaccatcaccatctgcattgtactc
aacacattgtttatggccatggagcattatccaatgagcaaaggtttcaccagtatgctg
gctttgggcaatgtggtatttactgcaatcttcacggctgaaatggttctcaagatcatt
gctttggacccatactattacttccaggagagatggaacatttttgatgcaatcattgtc
agtttaagcttgatggagctgtgtttggaaaaagtgggtggcatggctgttctgagatca
ttcagattgctgagagtattcaagttggctaaatcttggcccactcttaacacactgatc
aaaataattggtaattcagtgggggctttgggcaacctgacgctggtgctggccattatc
gtcttcatctttgctgtagtgggcatgcagctatttggaaaatattacaaggacaatatg
tctaaaatctgcaaacaatgcactccaccccgtctgccccgttggcacatgaacgacttc
ttccattcattcctcattgtgttccgagtgctttgtggagagtggatagagaccatgtgg
gactgtatggaagtggctgggacgcccatgtgcatcattgtctacatgatggttatggtc
attggaaaccttgtggtgctgaacctattcctggccctgctgctcagttcatttagtgct
gacaacctggcagcgacagaagatgacagcgacatgaacaatttgcaggttgccatcgga
cggattcacaaaggcattgcctttgtcaagtctctacttcgaaacagctgcaacagtgtc
tgtctcaggacaaaaaagaaagggaaaggtgaggacaaatccttggatgagctacacaaa
cctttcgggccaaacggtgtccccaaccacatcatcaaagattttcctaagaatggaaat
ggggatgtgaccggagtggacaaaactggagacaagtacattgtcagcagcaagagtgat
gattctattatgtctttcataaacaatcctagtctgactctcagtgttcctattgctgtg
ggagagtctgactttgaaaacctcaacacggaagacttcagcagtgcctcatctgatgca
gcaggatgccatgtgattgtagatgacgatgaccagtccagctcctctgagggcagcaca
atagatgttgtcccaggcggggagggaagagactctgtagactttgaattggaagaatct
atggaaccggacgcatgctttcctgatggctgtgtgcaaaagttcccatgttgtcaggta
aacgtcgaagtgggctggtggaagatgtggtggacgcttagaaagacctgttacaacatt
gtggagcacaactggtttgagagctttatcatcttcatgatcctgcttagcagtggagca
ctggcatttgaagacgtctacattgagaagagaaagaccattaaaacgatgttggagtat
gcagataaaatcttcacctacatcttcattctggagatgttactgaagtgggtggcgtat
ggatatgccaagtattttacaaatgcctggtgctggctggacttcctaattgttgatgtc
tcactggtcagtttggtggccaatgccatgggatattctgatcttggtccaatcaagtct
ctgagaactctgcgagctctgaggccactgagagccctgtctcggtttgaaggcatgagg
gtggttgtgaatgccttgcttggagccattccttcaatcttcaatgtgctgctggtatgc
ctcatcttctggctcatcttcagcatcatgggagtcaatttgcttgcggggaagtacggc
cattgtgtcaacagaacctcagatgaagatttccttccatcaatggtgaaaaacaagaca
gattgtttgaagtttgacaaagaggttgctcgctggaagaactccaaaatcaactttgac
aacgttggcttgggttaccttgcactgctgcaagtggctacattcaaaggctggatggat
atcatgtatgctgctgtagacgctcaaagcaagcaagaagaacaaccagaatatgagaac
aacatgtttatgtacatatattttgttgttttcattatatttggagccttctttacactc
aatctcttcattggtgtcatcatagacaatttcaatcagcaaaagaaaaagtttggaggt
caagacatcttcatgactgaagaacagaagaaatactacaatgccatgaaaaagctgggg
tcaaagaaacctcaaaaacctattcctaggccatcaaacaaaattcaaggatacatcttt
gacttcaccacaaaacaggcattcgatattgtaataatggttctaatatggctgaatatg
gtggccatgatggtggaaactgaagaccagtccaaacaaaaggacaatattctctactgg
attaatgtagtattcattatcatcttcactggagagtgtttgttgaagatgatcgcgctt
cgccattattttttcacaaatggctggaatgtgtttgacttcatcgttgtcttcctgtca
atcattggtgtgtttctctcaaaactgatagaggagtattttgtttcgccaaccttgttc
agagtcatccgattggctcggattggtcgcgtcctccgccttattaaaagtgccaaagga
atccgcacactactgtttgccttgatgatgtcacttcctgccttgttcaacattggtctc
ttgctcttcctggttatgtttatctatgccatctttggcatgtcaaactttgcttacgtc
aagagggaagcaggcattgatgatcttttcaattttgagacatttggcaacagcatgatc
tgtttgttccagatcaccacctcagccgggtgggatggcctacttgctcctattctcaac
aaacatgaagatgattgcaacaattccacagagcatcctggcagtctttttaagggagac
tgtggaaatcctgctgtggggattgccttctttgtgagctacatcatcatctgtttcctg
attgtagtgaatatgtacattgcagttatcttagaaaactttggtgtggccactgaggag
agcacggacccactaagtgaggatgattttgaaacattttatgaggtctgggaaaagttt
gatcctcatgcaacacagttcatagagtacaataagctgtcagaatttgcagatgctctg
gacccaccattacgcatagctatgcctaacaagctggaactgatctctatggatttaccc
atggtcaatggcgagcggattcactgcctggacatcctatttgcattcacaaaacgtgtt
ctgggcgagggtggggagatggacatcctaagggggcagatggaggagcgcttcatggcc
tccaatccttccaaagtgtcccatgaacccatcactaccaccctccgccgcaaacaggag
gacacgtcagccattatcatccagagagcattcaaaaagtatgtaaggaagcatgttgcc
acaaaggccttaaactcatccagtaacaatattcaaaaagatgaaacacacattgacaaa
gaggatcttgtcactgacaaactccaagacatttctagtgctgataaaagtgaactgact
ccttcaacggcccctcaaccttcatgtaacagtgtgacaacaaatggaaaaaacaaatat
gaaaaagacaaaagtgaaaaagaggttgagggaaaagatgtcagagagtaa
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integrated database retrieval system
