Etheostoma cragini (Arkansas darter): 117961643
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Entry
117961643 CDS
T07493
Symbol
cacna1ab
Name
(RefSeq) calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b isoform X1
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117961643 (cacna1ab)
04020 Calcium signaling pathway
117961643 (cacna1ab)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117961643 (cacna1ab)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117961643 (cacna1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
EGF_Hmr-1
Motif
Other DBs
NCBI-GeneID:
117961643
NCBI-ProteinID:
XP_034756347
LinkDB
All DBs
Position
2:complement(28027359..28168124)
Genome browser
AA seq
2425 aa
AA seq
DB search
MARFGDELPNRYGGGGGGGGGGGGGGAGGQGGPGRGGSRQGGPPGGQRMYKQSMAQRART
MALYNPIPVRQSCLTVNRSLFLFSEDNLVRKYAKKITEWPPFEWMILTTIIANCIVLALE
QHLPDGDKTPLSERLEETEPYFIAIFCFESGIKILALGFALHKGSYLRNGWNVMDFVVVL
TGILSSVGSQLDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFVAIL
MFAIIGLEFYMGKFHTTCYDKVTREVVDALPCGNELPSRLCPNGTVCEGHWIGPNYGITQ
FDNILFAVLTVFQCITMEGWTDMLYYSNDVEGSAWNWMYYIPLIIIGSFFMLNLVLGVLS
GEFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILAEEDGTVNFDGTRRRP
TIKTKNNKTELLNPEEGEDNMGDAVGFARSSLKNGMDGSNYSKRERRLRFFIRKIVKTQA
FYWTVLCLVGLNTMCVAAVHYNQPEMLSDFLFYAEFIFLGLFMSEMLIKMYGLGIQPYLH
SSFNCFDCVVIVGSIFEVVWATIKPGTSFGISVLRALRLLRIFKVTKYWAPLRNLVVSLL
NSMKSIVSLLFLLFLFIVVFALLGMQLFGGQFNFDDGTPPTNFDTFAAAIMTVFQILTGE
DWNMVMYDGIESQGGVNDKGMVFSIFFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDE
EEQEEAANQKTAMQKAKEVAEVSPLSAANLTIAAKEQQKNHIKGNMSVWEQRTSEIRRQN
LMTSREALYNELEQEEWKVGGEGEEVSYPRKPRGDMKTHLDRPLVVNPQDNRNNNTNKTQ
PGELPLDQEYRRQDIDHYRRATHHYHCHPHHQKATGTGQPADTRMERGFSCTSLGNAEVQ
LGEGRHSHRSHRGHRHRNREGREARSVSPHHNEGLDGNSEPRMSRQHRKAAREGEEGRRH
RSRGTEGEGEKGKEGEGRKSRRHRHGNQERSREHRTRKEHHSTGPSLSTARPIQQYNEDL
DNFRNNSKLAGAHVHPYALPPDHPDHPDHVNNLLNCRDADTHTLLHSMDSLILTSMAKPE
YTKIDMPPVYPYPSTNAILQVNKNANTDQKKSEEKKEEEDEGGDEDGPKPMPPFSSCFIM
STTNPFRKCCHYILTLKYFEFSILSVIAMSSIALAAEDPVWPESPRNNVLRYFDYVFTGV
FTFEMLIKMVVLGLFLHQGSYFRDLWNILDFIVVSGALVAFAFTPTSTRGSSKGKDISTI
KSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVVAVQLFKGR
FFFCTDESKEFERDCRGEYLVYDRDEVKAQKREWKKYDFHYDNVAWALLTLFTVSTGEGW
PQVLKHSVDSTYENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMM
EDYSLEKNERACIDFAINARPLTRHMPKNKLSFQYRMWQFVVSPPFEYSIMALIALNTIV
LMMKFDGASETYDEVLKNLNIVFTTFFFMESVLKVIAFGPLNFFRDAWNIFDFVSVLGSI
TDILVTELGNLNNFINLSFLRLFRAARLIKLLRQGETIRILLWTFVQSFKALPYVCLLIA
MLFFIYAIIGMQLFGNLALDDERESAINEHNNFRTFIMALMLLFRSATGEAWHDIMLACL
GGKECDPASGNTEPECGSTFAYTYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGP
HHLDEYVRIWAEYDPAACGRIHYKDMYSLLRVISPPLGLGKKCPHRVACKRLLRMDLPVA
DDNTVHFNSTLMALIRTALDIKIAKGGADKHQMDAELRKEMMAIWPNLSQKTLDLLVTPH
KAATDLTVGKIYAAMMIMEYYRQSKMKKLQALREEQNRTPLMFQRMEPPSEGGGTDGQGG
QGLNCLPSTQPDNPNTIPPEGGMTESQSWVTAKAQEMFQKTGNWSPDRPYPDNPHDNRHN
PQTVEMREMGRDGYSDTEPYHPMDGHGRTLSMPRLSADNQRAHAVSRRRHRPRGNNLSTI
TDTSPMCRSTSSLVHGRTGRGVRLDDYSLERVVSEEGRHGGGRRHRDRSHGASQRSLTRY
TDADTGLGTDLSTTTQSGDFPPKERERDRGRTKDRRHHHHHHHHHSSMDKERYGPDRHDY
SHRHPHDRHWSRSPSDGPDGRGHRQGSSSVSGSPVPSTSGTSTPRRGRRQLPQTPAVPRP
HVTYSPTVRKPSYGPPGPGRLRSPSPRHFSPPDHERGYHHRPPSRQVSPHHGTSSPRHGS
PRSPRHQSPRSPLHGSPRSPHRGRWSGPPPGDSLEGDGPFYERDYEYERHHEPPAYEQSL
SHGNPHPHGGNPHPRSPRTARHGPPPPPHPHPRRVPNGYRSSSPSPHQRGPPGAPPHPHH
RPPHARGPRKGLHEPYSETDEDDWC
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgttttggagacgagctacccaacaggtatggaggaggaggaggaggtggtggt
ggcggtggtggcgggggtgccggcggacaaggggggcccggccgcggcggcagcaggcaa
ggggggccccccggagggcagcggatgtacaagcagtcgatggcccagagagcccggacc
atggccctgtacaaccccatacccgtccggcagagctgcctaacggtcaaccgctccctt
ttcctcttcagcgaagacaacctggtgaggaagtacgccaaaaagatcaccgaatggcct
ccgtttgaatggatgatccttaccaccatcattgcaaattgcattgtcctggctctggaa
cagcaccttcctgatggagacaagacgcctctgtctgaacgactggaggagacggagccc
tacttcatagccatcttctgttttgaatcggggataaagatcctggccctgggttttgcg
ttacataagggctcctatctgaggaacggctggaacgtcatggactttgtggtcgtgctc
accggtattttgtcgtcagtggggtctcagcttgacttgaggacactacgagccgtcaga
gtgctgcgacctctgaaactggtgtctgggattcccagcctgcaggtggtgctcaagtcc
attatgaaggcaatgattcccctgctgcagattggcttgctgttgttcgtggccatcctt
atgtttgccatcatcggcctggagttctacatgggaaagttccacactacctgctacgac
aaagtcacacgagaagtagtggacgcattaccatgtggcaacgagttgccatcccggttg
tgtcctaacggcacagtgtgcgaaggtcactggattggacccaactacggcatcacccag
ttcgacaacatcctgtttgccgtgctcactgtcttccagtgcatcaccatggagggatgg
acagacatgctctactacagtaatgacgtggagggcagtgcctggaactggatgtactac
atccccctcatcatcatcggctccttcttcatgctcaacctggtgctgggtgtactctca
ggtgaatttgccaaagagagagagcgagtggagaacaggagcgagttcctcaagctgagg
cgacagcagcagattgagagggagctcaacggatacctggagtggatctgcaaagcggaa
gaagtgattttggctgaagaggacggcacagtgaactttgatggtacgaggcgaaggcca
accatcaaaaccaaaaacaacaagacagagctgctgaaccctgaagaaggagaggacaac
atgggagatgctgtaggttttgcccgctccagtttaaaaaatggaatggacggctccaat
tatagcaagagggagcggcgactgagattcttcatccgcaagatagtgaagactcaggct
ttctattggactgtgctctgcctggtgggcctcaacaccatgtgtgtggctgccgtgcat
tacaaccagcctgagatgctctccgacttcctcttctatgcagagtttatctttctcggt
ctgttcatgtctgagatgctgatcaagatgtatggtctgggcatccagccctacttgcac
tcctcattcaactgctttgactgtgtggtcattgtgggcagtatcttcgaggtggtgtgg
gccaccatcaaaccaggaacatccttcgggatcagtgtgttacgagctcttcgactgctc
cgcattttcaaagtcaccaagtactgggctcctcttcgaaacctggtggtgtctctgtta
aactccatgaagtccatcgtcagtttgctgttcctcctcttcctcttcattgtggtcttt
gccttgttggggatgcagctgtttggaggacaattcaactttgacgacggaaccccacct
accaactttgacacttttgcagcagcgatcatgacagtgtttcagatcctgacaggagaa
gactggaacatggtgatgtacgatggcattgagtcccagggaggagtgaacgacaaaggg
atggtcttctccatcttcttcatcgtcctcacactttttggcaactacactctgctaaac
gtcttcttggccattgctgtcgacaatctggccaacgcccaggagctcaccaaggatgaa
gaggaacaggaggaagcagccaatcaaaagactgcaatgcagaaggctaaggaagtagca
gaggtcagcccgctgtcagcagccaacctgactattgctgctaaggagcagcagaagaac
cacatcaagggcaacatgtcagtgtgggagcagagaacgagcgagatccgccgtcagaac
ctgatgacgagtcgcgaggcgctctacaacgagctggagcaggaggagtggaaggtggga
ggggagggagaggaggtgtcctacccacggaaaccacgcggcgatatgaagacccacctg
gaccgaccgctggtggtcaaccctcaggacaaccgcaacaacaacaccaacaagacccaa
cctggtgagctgcctctagaccaggagtaccggcgccaggacatagatcactaccgtcga
gccacacaccactatcactgccacccccatcatcagaaagccactgggacgggccagccg
gccgatacccgcatggagcgcggcttcagctgcacgtctctgggcaacgcggaggtccag
cttggggaggggaggcacagccacaggagccaccgtggccaccggcacaggaacagggaa
ggcagggaggctcgcagcgtgtctccccaccataacgaggggctagacgggaacagcgaa
cccaggatgtcccggcaacaccgcaaggcagccagggagggggaggaaggcaggagacat
agatccagagggacggagggagagggggagaaaggaaaagaaggggagggacggaaatcg
agacggcatcgccatggcaaccaggagagaagcagagagcatcgcaccagaaaggagcac
cacagcaccggtcccagcctctccaccgcacggccgatacagcagtacaacgaggatctg
gacaacttccgcaacaacagcaagctagccggtgcccatgtgcacccttacgccctccca
ccggatcacccggaccatcctgaccacgtcaacaacctgctgaactgccgtgacgcagac
acccacaccctcctccacagcatggacagcctgatcctgaccagcatggccaaacctgag
tacacaaaaatagacatgccacctgtctatccctacccctccaccaacgccatcctgcaa
gtgaacaagaacgccaacaccgaccagaaaaagagtgaggagaagaaggaggaggaggac
gaggggggagatgaagacggccccaaacctatgcctcccttcagctcctgcttcataatg
tccaccaccaacccgtttcggaagtgctgtcactatatcctgacgctgaagtattttgag
ttcagcatcctgtctgtcatcgcaatgagcagcatcgccctcgctgcagaggaccctgtc
tggcctgagtccccacgaaacaatgtgctgcgttattttgactacgttttcacaggcgtc
ttcacatttgaaatgttgatcaagatggtggtgctcggcctgtttctccaccagggctcc
tactttcgcgacttgtggaacattctggactttatagtggttagtggtgctctggtggcc
ttcgccttcacgccgactagcacccggggcagcagcaagggcaaagacatcagtacgatc
aagtcccttcgtgtgttgagggtgctgcgtcctctgaagaccatcaaacgactccccaag
ctgaaggctgtgtttgactgtgtggtcaactctctgaagaatgtgctgaacatcttgatt
gtgtacatgctcttcatgttcatcttcgctgtggtggccgtgcagctctttaaaggccga
ttcttcttctgcacggacgaatccaaagagtttgagcgtgactgcaggggcgagtacttg
gtgtatgatagagatgaggttaaagctcagaagcgggagtggaagaagtacgatttccac
tacgacaacgtggcttgggccctcctcaccctcttcactgtctccactggagaggggtgg
ccgcaggtgttaaagcactcggtggactccacctatgagaatcagggccctagcccgggt
tataggatggaaatgtccatcttttacgtggtgtacttcgttgtcttccccttcttcttc
gtaaacatctttgtggctctcatcatcatcaccttccaggaacagggggataagatgatg
gaggactacagtttagaaaagaacgagagagcctgtatagatttcgccatcaatgccagg
cctttgactcgccacatgcccaagaataaactgagcttccagtatcgcatgtggcagttt
gtggtgtctccgcccttcgagtacagcatcatggctctgattgcgctcaacaccattgtc
ctcatgatgaagtttgacggtgcatcagaaacatacgatgaggtcctgaagaacctcaac
atcgtgtttaccaccttcttcttcatggaatcagtcctcaaggtcatcgctttcggccct
ctgaatttcttcagagatgcctggaacatttttgactttgtctccgtccttggaagcatc
actgacatattagtgacagaactagggaatctgaataacttcatcaacctgagcttcctg
aggctgttcagagcagctcgactcatcaagctgctgagacagggagagaccatccgcatc
ctgctgtggaccttcgtccagtcctttaaggctctgccatacgtgtgcctgctcattgcc
atgctctttttcatctatgccatcatcggcatgcagttgtttgggaatttggcgctagat
gacgagagagagagtgccatcaacgaacacaataacttcaggaccttcatcatggctcta
atgctgctgttcaggagcgctacgggcgaagcctggcatgacatcatgttggcttgcctg
ggtgggaaggaatgcgacccggcctcagggaacacagaacctgaatgtggcagcaccttt
gcctacacctactttgtctccttcatcttcctctgctccttcctgatgctgaatctgttc
gtggctgtcatcatggacaactttgagtacctaaccagagactcctctatcctggggccg
catcacctggacgagtatgtaaggatatgggccgagtacgaccctgcagcctgcgggcgc
atacattataaggatatgtacagtttattgcgagttatctcccctcctctgggccttggc
aagaaatgcccacatagggtggcctgcaagaggttgctgcgcatggacctgccggttgct
gatgacaacacagtgcattttaactccaccctcatggctctgatcaggacagcactggat
ataaagattgctaagggcggtgcagacaagcaccagatggatgcagagctgagaaaggag
atgatggctatttggccgaacttgtcgcagaagacactggacctgctggttacgccgcat
aaggcagccacagacttgacggtgggcaaaatctacgctgccatgatgatcatggaatac
taccggcagagcaagatgaaaaagctgcaggccctgcgagaggaacagaaccgaacacca
ttaatgtttcagcgcatggagccaccctctgagggagggggcacagacggccaggggggt
caaggcctcaactgtctccccagcacccagccagataacccaaacaccatacctcctgag
ggtggcatgactgagagccaatcgtgggtgacggccaaagcccaggaaatgttccaaaag
acgggtaactggagccccgacagaccctaccccgacaatcctcacgacaaccgtcacaac
ccccagacggtagagatgagggagatggggcgggacgggtactccgacactgagccctat
cacccaatggatgggcatgggcggaccctctccatgccccgcctctcggcagacaaccaa
agagctcatgctgtttcgcggaggagacacaggcctcgtggaaataacctcagtaccatc
accgacaccagtccgatgtgtcgctccacctccagcctggtccacgggcgtacgggccgg
ggcgtgagactggacgattactccctggagagggtggtgtctgaagaggggagacacgga
ggaggacgcagacacagggacaggagtcacggggcttcacagcgctccctgaccagatac
actgacgctgacacgggtctgggcacagacctcagcacgaccacgcagtcgggcgacttt
ccacccaaggagcgcgagcgggaccgcggccggaccaaggaccgtcgtcaccaccatcac
caccatcaccatcacagctcgatggacaaggagcgctacggccctgacagacacgattac
tcccacaggcacccccacgaccgccactggtcccgctcacccagcgatgggcctgacgga
cgtggacacagacagggcagtagttcggtgagcggcagcccggtcccctccacctcgggg
accagcactccgcggagaggccgtcgccagctaccccagacccctgctgtaccccgacca
catgtcacctactcccctactgtccgcaagcccagctacggccccccagggccgggccgt
ctgcgctcgccctcccccagacacttctccccaccagaccacgaaagaggctaccaccat
cgacccccttcacgccaggtttctccccaccacgggacctcctcaccgcggcacggttca
ccgcgctcccctaggcaccagtccccacgctcgcccctccacggctcgcccaggtcccct
caccgaggccgatggagcgggcctccgcctggggacagcctggagggcgacggacccttc
tacgagcgtgactatgagtatgaacggcaccatgagccccctgcctatgagcaaagcctc
tcccatggcaaccctcacccacatgggggaaatcctcacccacgctcacctaggactgcc
cgccacgggccccctccgccccctcatccgcatccacgtagggttcccaatggctaccgc
tcatcctcaccttccccacatcagcgggggccccctggggcacccccccatccacaccac
cggcccccccatgcccgagggccccgcaagggcctgcatgaaccttatagtgagacggac
gaggatgactggtgctag
DBGET
integrated database retrieval system
