Etheostoma cragini (Arkansas darter): 117961895
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Entry
117961895 CDS
T07493
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117961895 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117961895 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117961895 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecra00535
]
117961895 (col9a1a)
Proteoglycans [BR:
ecra00535
]
Extracellular matrix (ECM) proteoglycans
Others
117961895 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117961895
NCBI-ProteinID:
XP_034756798
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Position
2:complement(29065226..29090550)
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AA seq
687 aa
AA seq
DB search
MAPCRIGGLSLLAILLQIVLICSAQRGPVGLRGPQGPPGPAGVPGVDGIDGDRGEDSTVT
GGPGPDGDNGKDGVPGAAGLPGADGPVGPPGDVGPVGLKGPKGEPGARGPAGERGEGPDG
LDGLPGTDGLPGELGKVGPPGARGKRGQVGLPGVAGPRGPPGVYQGEDLCPNACPAGLNG
HPGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGPLGEVGSQGLPGPGGPRGLQGIIGSKG
DRGPRGKPGDGGPQGIQGHPGDSGQRGAIGELGPAGVQGEPGPSGIRGVPGPKGEPGLAG
PDGREGIPGLPGSRGLAGKSGAPGDAGPQGLPGLPGAYGHKGFSGPVGNPGDPGVVGVMG
SPGKQGERGEQGEVGPVGPRGGPGSRGERGHDGPPGSPGPRGVKGDPGFPGLPGPAGYRG
EKGDRGAVGLTGPKGDQGGAGAEGTPGDAGDLGEQGEPGEKGSTGPPGETGNKGPEGGRG
QQGKEGKAGQPGPRGMQGDTGAPGLPGTQGPAGKSPTDTHIKQVCMRVMQEQLAQLAASL
RRPDSGTSGLQGPPGPPGPPGPSGENGFPGHTGSRGLPGLKGPAGLMGRKGPKGDQGDKG
ERGPTTRGPKGAPGAPGLPGEPGRPAYGQDGRDGERGPRGVPGLVGVPGPPGPAGVHGYC
ESSQCVLPMVASPVSAKDSSMKGPSDM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctccctgcaggatcggtggactgtctctgctggcgattttactgcaaattgtactg
atttgctcggctcagaggggcccggtcggtctcagaggcccccaggggccgcccggacca
gcaggcgtgcccggagtggacggcattgacggcgacagaggagaagactccacagtgacc
ggtggaccaggtccagacggtgacaacggcaaagacggagttcctggagctgcaggcctt
ccgggcgcagatggaccagttggacctcctggagatgtaggcccagtgggcctaaaagga
ccaaaaggcgagcctggtgcacgtgggcctgctggagagcgcggtgaaggacccgatggg
ttggatggtcttcctggtactgacgggttgccgggggaactgggcaaagttggaccacca
ggagcgagaggcaagaggggtcaagtgggtcttcctggtgttgccgggccacggggtcct
ccaggcgtgtaccaaggcgaggacctgtgtcccaatgcctgccctgctggtctcaatgga
catcctggtctacccggcatgaaaggccacaaaggagttaaaggtgaatccggtgagcct
ggaagacaaggacacaagggagaggagggcgaacaaggacccctgggtgaagttggatct
caaggactaccaggcccaggtggaccaagaggcctccaaggaataattggctccaaaggt
gacaggggacctcgtgggaaacctggtgatggaggtcctcagggaatccagggacatcca
ggtgattcgggtcaaagaggtgccataggggagcttgggccagcgggagtgcagggggag
ccgggtccatctggaatccgaggagtgccagggccaaagggagagcctggccttgctggt
ccagatggccgtgagggaatacccggtctgccaggatcaaggggtcttgcagggaaaagt
ggggctccaggtgatgctggcccacaaggacttcctggtttgccaggcgcttacggccat
aaaggattcagtggtccagtgggtaacccaggtgatccaggtgttgtaggagtgatgggg
tctccagggaaacaaggcgagcgtggcgagcaaggagaggtgggaccggttggacccaga
ggaggaccaggttcaagaggagagagagggcatgacgggcctccaggatcaccaggaccc
aggggagtcaaaggagacccgggatttcctggacttcctggccctgctggttatcgtggg
gagaagggcgacaggggtgcagtcgggctcactggtccaaagggagaccagggaggtgca
ggtgctgaaggaactccaggagatgccggagacctgggcgaacaaggagaaccaggagag
aaaggatcgacaggcccgccaggagagacaggaaataaaggaccggagggcggccgagga
cagcaggggaaagagggcaaggctggacaaccgggaccacgtggcatgcagggcgatacg
ggtgcaccaggcctgccggggacgcagggaccagcggggaaatccccaacagatacacac
attaaacaagtctgcatgagggtaatgcaagagcaactggcccagctagcagctagcctg
agaaggcctgattcaggcacctctgggctacagggtccccccggcccacccggtcctcca
ggcccctccggagagaacggtttccccggacacaccggatcacgaggccttcctggtctg
aagggcccagctgggcttatgggtcgcaaaggacccaaaggtgaccagggcgacaaaggg
gaaagaggacccacaacgaggggacccaaaggagcaccaggtgcccccggtctaccaggt
gaacccggtcgaccggcttacggccaagatggtcgtgacggagaaaggggtccccgtggt
gttcccggtctagtcggcgttcccgggccccctggtcccgccggcgtgcatggttactgt
gagtcgtcacagtgcgtcctgcccatggtggcgtcgccggtttctgcaaaggactccagc
atgaagggccccagtgacatgtga
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