Escherichia coli O45 K1 H7 S88 (ExPEC): ECS88_4061
Help
Entry
ECS88_4061 CDS
T00830
Symbol
ligB
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecz
Escherichia coli O45:K1:H7 S88 (ExPEC)
Pathway
ecz03030
DNA replication
ecz03410
Base excision repair
ecz03420
Nucleotide excision repair
ecz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECS88_4061 (ligB)
03410 Base excision repair
ECS88_4061 (ligB)
03420 Nucleotide excision repair
ECS88_4061 (ligB)
03430 Mismatch repair
ECS88_4061 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecz03032
]
ECS88_4061 (ligB)
03400 DNA repair and recombination proteins [BR:
ecz03400
]
ECS88_4061 (ligB)
Enzymes [BR:
ecz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ECS88_4061 (ligB)
DNA replication proteins [BR:
ecz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ECS88_4061 (ligB)
DNA repair and recombination proteins [BR:
ecz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ECS88_4061 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ECS88_4061 (ligB)
MMR (mismatch excision repair)
DNA ligase
ECS88_4061 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ECS88_4061 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAR05270
UniProt:
B7MFK8
LinkDB
All DBs
Position
complement(4025543..4027225)
Genome browser
AA seq
560 aa
AA seq
DB search
MKVWMAILISILCWQSSAWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLA
TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQQPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggcgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtctcacgcagtggcaacgctgttttgggaacgagactcgc
gatgtgatgatgccgcctttaaacggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttcgctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggatctggct
accgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgatgaggtt
gcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggcgtggtt
gtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcagtttgcg
gtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgatgatgtg
gtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgccctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaatctggct
cgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacagttctgg
cagcagcagccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag
DBGET
integrated database retrieval system
