Candidatus Endolissoclinum faulkneri L5: P856_152
Help
Entry
P856_152 CDS
T04221
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
efk
Candidatus Endolissoclinum faulkneri L5
Pathway
efk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
efk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P856_152 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efk03021
]
P856_152 (rpoC)
03400 DNA repair and recombination proteins [BR:
efk03400
]
P856_152 (rpoC)
Enzymes [BR:
efk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P856_152 (rpoC)
Transcription machinery [BR:
efk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P856_152 (rpoC)
DNA repair and recombination proteins [BR:
efk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P856_152 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
DUF294
CBM_3
Motif
Other DBs
NCBI-ProteinID:
AHC73390
UniProt:
V9TVM6
LinkDB
All DBs
Position
complement(222366..226466)
Genome browser
AA seq
1366 aa
AA seq
DB search
MNELVNIFGRPSGLQRFDTIQISIASQDRMKSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGITCEKCGVEVTLSKVRRERMGHIDLASPVVHIWFLKSL
PSRIGLLLDMTLKDLEKVLYFENFMVTDPLLSPLKDKQLLSEEEYYQAQDEYGNNAFVAQ
MGAEALKTILSRLDMEATRSAISVELRETGSEARRKKLVKRLKIIEAFQESDSRPEWMIM
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSGMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
DLLLHQCGLPKKMALELFKPFIYSKLELYGMASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIILGLYHLTMERENQPGEGMIFADPYEVDHAIDN
GIVTLYTKIQARIATYDVNGNKVVRRVKTTPGRLKLSLLLPDSPKLGFEMINCLMTKKEV
SNIIDMVYRHCGQKETVVFADRLMSLGFSHACRASISFGKDDLVIPDAKQSLVESANEEV
KQLEQQYLDGLITQGEKYNKVVDVWSRCTDQVADRMMSVIKEDDGVNPVNAVWMMAHSGA
RGSANQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIVTEVDCGTSNGITVKPVIDGGEVIEPLGDRILGRTTVNEVLD
PVNGAVIIKKGQTIDETMVEEIERANIDSVLIRSVLTCRTHPGVCAVCYGRDLARGTLVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSTVEATFGTIVQLHNRSVVTNSD
GVLIVMNRNTEIILLDEQGRERARHRVPYGAKLFVDDGVVVESGYKMAEWDPYTIPIITE
REGITHYVDLVEGLSMREVTDEATGISSRVVIDWKQQAKGSELKPRITLRNTSGELIQLS
NGLEARYFMSVDAVLSVDNGSQVKAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAVITETAGKIEFGKDYKTKRRVIVRPVEKNATPIEYMIPKGKHLAVQEGDFVQKGDMLL
DGARVPHDILGIMGIEALADYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEVIKTGD
TTLLLGENIDRDEYKKANDKALASDLHPAVAKPVLQGITKASLQTKSFISAASFQETTRV
LTEAAVSGKEDGLDGLKENVIVGHLIPAGTGSVMSRLRRVAADRDQ
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagttagtgaacatttttggtcggccgagcggactacaaagatttgacactatc
caaatctcaattgctagccaagatcgcatgaaatcatggtcttttggtgaaattaaaaaa
ccagagactattaattaccgaacttttaaacctgagcgcgacggtttgttttgtgctaga
atcttcggtcctattaaggattacgagtgtttatgtggcaaatacaaacgtatgaagtat
cgcggtatcacctgtgagaaatgtggtgtggaggttacactttcaaaggtacgccgtgag
cgaatgggtcatattgatctggcttcacctgtcgtgcatatttggtttcttaaatcacta
cctagtcgcatcggtcttctgctagatatgactctaaaagatctagaaaaagttttgtac
tttgagaactttatggttactgaccctctgttatctccattgaaagacaagcagcttctc
agcgaagaagagtattatcaagcacaagatgaatatggtaataacgctttcgtcgcccaa
atgggtgctgaagctctgaaaaccattctttctcgcttagacatggaggctacacgtagt
gcaattagcgtagaattacgcgaaactggttctgaagctaggcgtaaaaaactagttaag
cgcttaaaaataattgaagcatttcaagaatctgactctcgcccagaatggatgatcatg
gatgtaatcccagtgattccacctgagttgcgtcccctggtgccattggatggtggtcgc
tttgctacatccgatttaaacgacctgtatcgccgtgtgattaatcgcaacaaccgttta
aagcgtttgatagaacttcgtgcgccagatatcattgtacgcaatgagaagagaatgctg
caagaagcagttgatgctttgtttgacaatggccgtcgcggacgcgttatcacaggtgcc
aataagcggccattaaagtcgcttagtgggatgctaaaggggaaacagggtcgctttcgt
caaaatttattaggtaagcgtgtcgactattcgggccgttctgttatagtagtgggtcca
gatctactattacatcagtgtgggctgccaaaaaaaatggcattggagttgtttaagccg
tttatctattcaaagcttgagctttacggtatggccagcaccataaaggctgcaaagcgt
atggttgaaaaagagcgccctgaggtttgggatattttggaagaggtgattcgcgaacac
ccagttatgttaaatcgtgcacctaccttgcatcgtcttggcattcaagcatttgagcca
aagcttgttgaaggcaaagcaattcaacttcatccgctagtttgtacagcgttcaatgct
gattttgacggcgaccaaatggcagttcacgtaccgttatctttggaggctcaactggaa
gctcgtgtgcttatgatgtcaaccaacaatattttaagtccagccaacggaaagccaatc
attgttccatcacaagacattatcctgggactctaccacttaactatggagcgcgaaaat
caaccaggcgaaggtatgatatttgctgatccatacgaagttgatcatgccattgataac
ggtatagtaactttgtatacaaaaatacaagctcgcatagctacatatgatgtaaatggc
aacaaggtagttaggcgtgtaaaaaccacacctggcagacttaagttatctttgctgctc
ccggatagtccaaaattaggcttcgaaatgattaactgcctgatgacaaaaaaggaagta
tctaacattattgacatggtgtatcgtcactgtggacaaaaagagacagtagtttttgca
gatcgtttaatgagtttagggtttagtcatgcttgtcgtgcaagcatttcctttggtaaa
gatgacttagtaattccggatgctaaacaaagtttagttgagagtgctaatgaggaagtc
aagcaacttgagcagcaatatcttgatggtctgattactcaaggtgaaaaatacaacaag
gtagttgatgtgtggtcccgttgcacagatcaagtagccgatagaatgatgtcagtaatt
aaggaggatgacggcgtaaatcctgtaaatgccgtatggatgatggcacattccggtgca
cgtggttctgctaatcaaattaaacaactagccggtatgcgcggcctgatggctaagcca
tccggcgaaatcattgaaactcctatcatttctaactttaaagaaggtttaactgtcctt
gagtactttaattcaactcatggtgcccgtaaggggctagctgacactgcgctcaagaca
gcaaattcaggttatttaacccgtcgtttggtcgacgttgctcaggattgtattgttaca
gaagttgattgtggtacctcaaacggtataaccgtaaaaccagtgatagacggaggtgaa
gtaatagaacctttaggagaccgtatcctcggtcgtactacagtgaatgaagtgctagat
ccagttaatggtgcagtaattattaaaaagggccaaactatagacgaaacaatggttgag
gaaattgaacgcgcaaatattgattcggttttgatacgctcggttctaacatgtagaaca
catcctggtgtctgtgctgtctgttatggccgtgatttggctcgtggtacactggtaaac
attggcgaggcagttggtgtaattgccgctcaatcaatcggtgagcctgggacacagcta
actatgagaacattccatataggtggtgctgctcaacgcggtgctgagcaatctactgtt
gaggctacttttggtacaattgtacagttacataatcgcagtgttgttactaactctgat
ggagtattaatagtaatgaatcgtaacactgaaatcattttgcttgacgagcaaggacgt
gagcgagcacgtcatcgcgtaccttacggagctaaattatttgtcgatgacggtgttgtt
gtcgagtctggctacaagatggcagaatgggatccttataccatccccattatcactgag
cgtgaaggtattactcattacgtcgacttggtagaaggcttgtccatgcgcgaggtaaca
gatgaagctactggtatctcgtctcgtgtagtgattgactggaagcagcaggccaaagga
agcgagttaaagccacgcataactttacgtaatacctcaggtgagttaatccaactttct
aacggcttggaagctcgctatttcatgtcagtcgatgctgtattatccgttgataatggt
tcgcaagtaaaagccggcgacgttctagcacgtatcccgcgtgaatcctcaaaaactcgt
gacatcactggtggtttaccacgcgtggctgaactcttcgaagctcgtcgtccaaaggac
tttgctgtaattacagaaactgccggtaaaatagagtttggtaaagattataaaaccaaa
cgtcgggttatagtacgtccagtggaaaaaaacgctactccgatagagtatatgatccca
aaaggcaagcatttagctgttcaagaaggagattttgtacaaaaaggtgatatgttactt
gatggagcacgagttccgcatgatattctaggcattatgggtattgaagctctagctgac
tatcttattaatgaaattcaagaagtttatcgtttgcaaggggttaagattaacgataag
catatcgaagtaattgttcgccagatgttacaaaaagttgaagtaatcaaaactggcgat
acaactttacttttaggcgaaaacattgaccgtgacgaatacaagaaagctaatgataaa
gccttagcgagtgatttgcacccagctgtagctaagccggtacttcagggtatcactaaa
gcctcacttcaaacaaagtcttttatctctgcagcgtcttttcaagaaactactcgtgtt
ttaactgaagctgctgtttccggaaaagaagatggtctagacggactaaaggaaaacgtc
attgtcggtcaccttatacctgcaggcacggggagtgttatgagccgtctgcgtagagta
gctgcagatcgtgatcaatga
DBGET
integrated database retrieval system
