KEGG   Epinephelus fuscoguttatus (brown-marbled grouper): 125896282
Entry
125896282         CDS       T08419                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
efo  Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018  RNA degradation
efo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:efo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125896282 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    125896282 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:efo03019]
    125896282 (lsm4)
   03041 Spliceosome [BR:efo03041]
    125896282 (lsm4)
Messenger RNA biogenesis [BR:efo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     125896282 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     125896282 (lsm4)
Spliceosome [BR:efo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    125896282 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 125896282
NCBI-ProteinID: XP_049444676
LinkDB
Position
LG10:18983883..18991739
AA seq 146 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGMSG
PGRGQQQQMQQQDKKPGKPQGMKNQH
NT seq 441 nt   +upstreamnt  +downstreamnt
atgcttccactatctctgctgaagactgcccagaaccatcctatgctggtggagctgaag
aatggggagacatacaatggtcacctggtcagctgtgacaactggatgaacatcaacctt
agagaagtcatctgcacctcgagggatggagataagttctggaggatgcctgagtgctac
atcagaggaagcaccatcaagtatctgcgaatccccgacgagatcatcgacatggtgaag
gaggaggtcgtgtcgaagggccgcggacgtggaggtgcccagcagaacaaacagcagggc
aaaggaagaggaggagccggcaggggtctgtttggcggtcgtggcagaggaatgtcaggt
cccggtcgcggtcagcagcagcagatgcagcagcaggacaagaaaccaggcaaaccacag
ggaatgaagaaccagcactga

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