Euwallacea fornicatus (polyphagous shot-hole borer): 136341874
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Entry
136341874 CDS
T10685
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136341874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efor03019
]
136341874
Enzymes [BR:
efor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
136341874
Messenger RNA biogenesis [BR:
efor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
136341874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
136341874
NCBI-ProteinID:
XP_066143341
LinkDB
All DBs
Position
1:complement(4530518..4545380)
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AA seq
532 aa
AA seq
DB search
MCEVNSRNFKFLYPEIKKRLQESKFCSIDTEFSALDPLPDKKASIFDTPSERYSKLNANL
SGVVPLQVGLTAFSFDPKKNSYLGKVYTFYVQPASFQYIHRSFYMQTGTINFLKLYNFDF
NKFVYDGIPFMNRDQELRLKDKMSTDEVSDINNSCKNVLEKIIDKEINQVKNWYAKAPVG
ATLVLPNVCTEGRSNEEIIFFVHKAFRSMCKNLWTYVENGEFVVKKVSPEEYRKLNFKYR
LEDETIDNLLGFSKVFRLLVELQKPIVGHNVFQDLLLIVGNFETTLPKKYLDFKELISKL
LPTIFDTKSISYELKSMLPKEKQWIDNGLNIIFDYFKNGVGRILATNSPAIEMDNPQLGY
DNFHNAGWDSFCTGYVFIRLAHLNIYQKYPSSKRFVPSELIAGLEQYKNRINIIRGSTSY
INLDKADPESNRPPKLVIESLKNRPVNVAQVTALLSTYGFVEVKRLPYQKYRALIAIDNY
VNARRILTHFNRNDSEYRISKYHPLRHSSGVKVILISGLAVSSAAILWFTFR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgaagtaaactcacgaaattttaagtttctctatcctgaaattaagaagaggttg
caagaatcaaaattttgcagcattgatacagaatttagtgccttggatccattacctgac
aagaaagctagtatatttgacacaccatctgaacgatattcaaagttaaatgctaactta
agtggagtagttccattacaagttggattaactgctttcagctttgaccctaagaaaaat
agttacttgggaaaagtatacacattttacgtccaacctgccagttttcaatatatacat
agaagcttttacatgcaaacaggcacaataaatttcttgaaactgtataattttgatttt
aataagttcgtatatgatggcattccttttatgaatcgagatcaagaacttcggctcaaa
gacaaaatgtccactgatgaagtgtctgacattaacaattcatgtaaaaacgtattagag
aaaatcattgacaaagagattaatcaggtcaaaaattggtatgccaaagctccagtgggt
gctactttagttttaccgaatgtttgcactgaaggacgcagtaatgaagaaattatattt
ttcgttcacaaagcatttcgaagcatgtgtaaaaacctttggacctatgtggaaaatggg
gagtttgttgttaaaaaggtctcaccagaggagtatcgtaaattaaacttcaagtatcgc
ttggaagatgaaacaattgataatttactggggttctcaaaggtgttcagattacttgtg
gaattgcaaaagcctatagtaggacacaatgtttttcaagacttactgcttatagtgggc
aactttgaaactactttgccaaaaaagtatcttgattttaaagaattaatatcgaaactt
ctgcctactatttttgatactaagtccatttcttatgagctaaaatccatgcttcctaag
gaaaaacaatggattgataacggtttaaatattattttcgattactttaaaaacggagtt
ggaaggattttggccaccaactctccagctatagaaatggataatcctcagcttggatat
gacaactttcacaacgcgggatgggattcattttgtactggctatgtcttcattaggtta
gcacatttgaatatttaccaaaaatatccatcttcgaagcggtttgttcctagtgagcta
attgctggattagagcagtacaaaaatagaattaatattattcgagggtccacttcctac
attaatttggataaagctgatccggagtctaacaggcctccgaaattagtcattgaatct
cttaaaaatagacccgtcaatgttgcacaggttactgctcttttgagcacatatgggttt
gtagaagttaaaagactcccatatcagaaatatcgagcccttatagcaatcgacaactat
gtaaatgccagaagaatcttgacgcatttcaatagaaatgattctgagtaccggattagt
aaatatcaccctctgagacactcttcaggcgtcaaagtaattcttataagcggtttagct
gtctccagtgctgcaattttatggtttacctttcgatga
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