KEGG   Duffyella gerundensis: EM595_1478
Entry
EM595_1478        CDS       T04258                                 
Symbol
ycfD
Name
(GenBank) 50S ribosomal protein L16 arginine hydroxylase
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
ege  Duffyella gerundensis
Brite
KEGG Orthology (KO) [BR:ege00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ege03009]
    EM595_1478 (ycfD)
Enzymes [BR:ege01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     EM595_1478 (ycfD)
Ribosome biogenesis [BR:ege03009]
 Prokaryotic type
  ribosomal protein modification factors
   EM595_1478 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA AraC_binding Cupin_2 Cupin_1
Other DBs
NCBI-ProteinID: CUU23712
UniProt: A0A0U5L3H1
LinkDB
Position
1:complement(1597104..1598243)
AA seq 379 aa
MECLMDYQLDLDWPDFIQRYWQKRPVLLKRGFKNFVDPLSPDELAGLAMENEVDSRLVSH
QDGNWQVGHGPFESFDHLGENNWSLLVQAVNHWHQPSAALMQPFRALPDWRTDDLMISFS
VPGGGVGPHLDQYDVFIIQGMGRRRWRVGDKVPMKQHCPHPDLLQVEPFDAIIDEEMEPG
DILYIPPGFPHEGWSLENALNYSVGFRAPSGRELISGFADYVLAHELGGKRFTDPDVPAR
DCPSTILPEEIEGIRQLMIDVIDQPEQFKQWFGEFISQTRHELDLAPPEPPYQPDEIYDA
LQQGDTLSRLGGLRVLTLEGAVFVNGEQIECARPEVLTALAHHHTLGIAQLGEALDDPSV
LAQLAALVNSGYWYFSEEE
NT seq 1140 nt   +upstreamnt  +downstreamnt
atggaatgtcttatggattatcagcttgatctcgactggcccgactttatccagcgctac
tggcaaaaacgcccggtactgctgaagcgcggcttcaaaaactttgtcgatcccctttct
cctgatgagctggccgggctggcgatggaaaatgaggtcgacagccgactggtcagccat
caggacggcaactggcaggtaggtcacggcccgtttgagagcttcgaccatctgggtgag
aacaactggtcgctgctggtgcaggcggttaaccactggcatcagccgtcggcggcgctg
atgcagcccttccgtgcactgccggactggcgcaccgacgatttgatgatctcgttctcg
gtgccgggtggtggcgtcggcccgcacctcgatcaatacgatgtctttattattcagggc
atgggtcgtcgtcgctggcgcgtaggcgacaaagtgcccatgaaacagcactgcccgcat
cccgatctgctgcaggtcgaacccttcgacgccatcatcgatgaagagatggagccgggc
gatattctctatattccgccgggattcccgcacgaaggctggtcgctggaaaatgcgctt
aattattccgtgggttttcgcgcgccaagcggccgcgaactgatcagcggctttgcggat
tacgtgctggcgcatgagctgggcggcaaacgctttaccgatcctgatgttccggcgcgc
gactgcccttccactatcctgccagaggaaatagaaggcattcgccagctgatgatcgac
gtgatcgatcagccagagcagtttaagcagtggtttggtgagtttatctcgcagacgcgt
cacgagctggatctggctccgccagaaccgccttatcagcctgatgagatctacgatgcg
ctgcagcagggtgacaccctgagtcgccttggcggcctgcgcgtgctgacgctggaaggt
gcggtgtttgttaacggcgagcagattgagtgcgcgcgtccggaagtgttaactgcgctg
gcccatcatcatacccttggcattgcgcagctgggcgaggcgctggacgatccgtccgtg
ctggcacaactggcggcgctagtgaacagcggctactggtattttagcgaagaagagtaa

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