Elaeis guineensis (African oil palm): 105053997
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Entry
105053997 CDS
T03921
Name
(RefSeq) uncharacterized protein isoform X2
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105053997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105053997
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105053997
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105053997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
DUF7605
Glyco_hydro_84_hel
FlgK_2nd
Motif
Other DBs
NCBI-GeneID:
105053997
NCBI-ProteinID:
XP_010933666
UniProt:
A0A6I9RXV3
LinkDB
All DBs
Position
11:115697695..115742687
Genome browser
AA seq
2431 aa
AA seq
DB search
MLPFSATISNQIRLLLQSLNDSNFDLIFRELCQFAEYRSEGSILLVQTCLDQVKLNGEEV
QNLQLKRNLVSAIFKFLLDRPNFSTIFSESLKGTPMGEGFLKDLSSALNLSEAEKVGIGL
ALADSEIPDLKMRGKNFCVSQIEELCANPTSILSEERIQDIVMFLYQSEGLSKHIDSFTK
IVSLLQLKDSTSFLSTTILTNDISVVNSWRHSDLFSGCYCNDFESVLAEIEKEMNMADVM
TELGYGCTINTVHCKEILSLFHPLNEVTLSKLLGTIARTHSGLKDAQNTYATFCAAVGSS
SESASSLLNSWNVDVLVDSIKQLAPETNWTRVMENLDHESFNIPDEKSFYLLMSIYSKAS
QDPFPLHAVCGSAWKNAEGQLSFLKYAVSAPPDVFTFAHSSRQLTFADSSYLMSKQGNQA
WFCLDLLEVLCQLAERGHVSSVRLMLEHPLTHCPEFLLVGVGHVNTAYNLLQYEVSSTVF
PVILKDSTKNGIIHYLWRVNPNLVLRGFIDTHTDPSNLLRILDICQELKILLPVLGATPF
LFSIKLAAIASRKDQINLEKWLNEHLSTYKDAFYQDCFKFLKEVLSNEANDDTYSSVQQH
QAAILNVYQETCSTFFKVLQAHSGQDISHQLIEGIKRLHVSSNPKIQNAVKTDATTSNGS
SDAIEAEANTYFHQIFSGQLSIDAMVQMLGHFKESSDKREQMILDCMIANLFEEYKFFPK
YPDRELKIAAVLFGSLIKHQLVSHLALGIALRGVLDALRKSVDSKMFMFGTKALEQFMDR
LVELPQYCNHILQISHLRGAHAELVSTVERALARSSSSLSESTGGYSLSTDQQQGSGAAS
VESVEASEVSWQLMGSASTQLAQQFSSLRLQKSSTVSANPKPPLSHTLQPAIVSVPIDSV
ANQEATVSQSLQTTNSHHSTGVTTAVSSSPSFLHARSIAPAGMLRQPSYITGFGAALNIE
TLVAAAERRDTPIEAPAPEVQDKILFMINNISTSNMDAKAKEFNEVVKEQYYPWFAQYMV
MKRASIEPNFHNLYLKFLDKVNSKSLNKEIVKTTYENCKVLLRSDLIKSSSEERSLLKNL
GSWLGKFTIGKNQALRAKEIDPKVLIIEAYEKGLMIAVIPFTSKILEPCHSSLAYQPPNP
WTMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRIREVQGNPDFS
NKYVAASRPQVIAEVNSGIMPTLNHVEMQPDVSSASYPRTDPKILAQYTSPHLASNTMVE
YDKAGGLIEPERIPSGQGLSQVTPSPFSLSQLLTIIPNSDSYININPKLSSIGSQLQFHR
IIQAAMDRAIKEILSPVIQRSVTIASRTTKELVLKDYAMESDDGIISRAAHLMVGTLAGS
LAHVTCKEPLRAALSSHLRSLLQSLNITSERIEQIIQILTTDHLDLGCALIENVASQKAV
ELIDGEISPSFAALRKQRETSGSAYYDAGTYAQGPFARVPEALRPKPGRLSLAQQQVYND
FIKNIWQNQSSQNSSAVPSGPPGLAGSSSNQILSHIYTSSSAPLNSSAYSTSQVPPFRSV
AEHLDMIAEESDHGSAQLLSASQTHIGADDNVIQHGGEVDSVAVSFPAATCPDLQVLGSV
VPSSPATSAADRLGTVLPESMLNTGDALYKYQQVAQKLEALIANDDRDTDIQGIVAEVPD
IILRCVSRDEAALAVSQKVFKSLYENASNGTHVASYLAILAAIRDVCKLVVKELTSWVIY
SDEERKFNKDVTIGLIRSELLNLAEYDVHLAKLIDGGRNKVATEFAISIFEALVVQETVV
RASELYNLMEALTKVAMRPGSRESLQQLVEIARNSMNTAPNITASEKPRQSRDNKKVLSG
RSLANREDYNANDPTVAEPAGFRDQVGLLFSDWCQICDLPATNDSAYSHYISQLQQCGLL
EGDDITDRFFRILMEDSVSHCILPEQVSSPGPVSLQSVQQLQQLQQLPYFSIDSFAKLVA
LVLKFCSVDQGSSKAILLPKILSVTVRVIQNDAEEKKLSFNPRPYFRLFINWLLDLASPD
PVLDSANFQVLTSFANALHALQPMKVPGWSFAWLELVSHRNFMPKLLTCNSPKGWPFFQR
LLVDLFKFMEPYLRNAELGEPVRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCI
QMRNVILSAFPCDMRLPEPSTPNLKIGLLAEISQSPRILSDVDGALKAKQIKAEIDEYLK
TRSEGSPFLTELKQRLLLPQNEANLAGTRYNVPLINSLVLYVGMQAIQQLQSKSTAHHAP
AQQMTHSPLMDIFLVGAAMDIFQILIKNLDTEGRYLFLNAVANQLRYPNIHTHYFLFVLL
YLFAEASEDIIQEQITRVLVERLMAYRPHPWGVLVTFIELIKNPRYSFWNKSFTRCAPEI
EKLFESVSRSCGGPKAVDDGMVSSGISDGNH
NT seq
7296 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttctccgccaccatctccaaccagattcgtctccttctgcagagcttgaac
gattccaacttcgacttgatcttccgcgagttgtgtcagtttgcagaatatcgaagtgaa
ggcagcattttgttggtccaaacatgcttagatcaagtgaaattaaatggtgaagaggtt
cagaacctgcagctgaaacggaatcttgtatctgcaatttttaaatttttgctggataga
ccgaatttcagcacaatttttagtgaatcattaaaaggtacaccgatgggtgaaggcttt
ctaaaagatctttcaagtgcattaaatctttcagaagcggagaaagttggcattggactt
gctctggctgattcagaaattccggatctgaaaatgagagggaaaaatttctgtgtttct
cagattgaggaactatgtgcaaaccccacttccattctctctgaggagcgaattcaggat
attgttatgtttctttatcagtctgagggcctttccaagcatattgattcttttaccaaa
atcgtgtctttattacagctcaaagatagcacttcctttctatcgaccacaatacttaca
aatgatatatctgtggtcaactcttggaggcattcagatctattctctggatgttattgt
aatgattttgagtctgttttagcggagatagagaaggaaatgaacatggctgatgttatg
acagaattgggctatgggtgtacaattaacactgtgcattgtaaagagatactctctctt
tttcatcccctcaatgaagtgacactttctaagcttcttggtacaattgctcgtactcat
tctggtctcaaagatgctcagaacacatatgcaacattctgcgcagctgttggtagcagc
tcagaaagtgcttcctcattgttgaattcatggaatgttgatgtccttgtagattcaatt
aagcaacttgctccagagacaaattggacacgtgtcatggaaaacctggatcacgagagc
tttaatattcctgatgaaaaatcattttatcttctaatgtctatatattctaaggcgtcc
caggatccgtttcctctccatgctgtatgtgggtctgcttggaagaatgctgaaggccaa
ttatcttttttaaaatatgctgtgtccgcaccacctgatgtatttacatttgcacatagt
tcaagacaactgacttttgctgattcatcatatctgatgagcaaacaaggaaaccaggca
tggttctgtctagatcttttggaggttttatgtcaacttgctgaaagaggccatgtcagt
tcagttcgactgatgcttgaacacccccttactcactgtcctgagtttttacttgttgga
gttggtcatgtaaatacagcatataatctcctccagtatgaagtatcttccactgtattt
cctgtgatattaaaagattctacaaagaatggcattatccattatctttggcgtgttaat
ccgaaccttgttcttcgaggattcatagacacacatacggatcccagtaatctactaaga
attctggacatttgtcaggagctgaagattttattaccagtattaggtgcaactccattt
ctgttcagcattaaattggctgcaattgcttctcggaaggaccagataaatcttgagaaa
tggttaaatgaacatttgagtacgtataaagatgctttttatcaggattgctttaaattc
ttaaaagaagtgctcagtaatgaggcaaatgatgatacatatagttctgtgcaacaacac
caagctgctattctgaatgtttaccaagaaacgtgctctacattcttcaaggttcttcaa
gctcattctgggcaggatatttctcaccaactcattgaaggtataaagaggctgcatgtt
tcatccaatccaaagattcaaaatgctgtaaaaacagatgcaacaacttctaatggaagc
tcagatgctatagaagcagaggcaaacacctacttccatcaaatattctcaggacagcta
tccatcgatgcaatggttcaaatgctgggacactttaaagaatcatctgataagagggag
cagatgatacttgattgcatgattgcaaatttatttgaagagtacaagttcttccccaag
tatccagatagggaactaaaaatagctgctgtgctttttggttctcttataaagcaccag
cttgtgagtcatctcgcacttggtattgctttgcgtggagttcttgatgcattgcgtaaa
tctgttgattcaaagatgtttatgtttggaaccaaggccttggagcagttcatggatcgt
ttggtagaattgccacaatactgcaaccatatattgcagatatcccatttgcgtggagca
catgctgaattggtttctaccgttgaacgggcacttgcaagatcttcgtccagtctgtca
gagtcaactggtggttactctctatctactgatcagcaacaaggttctggagcagcttct
gtagagagcgtggaggcatctgaggtgtcatggcaattgatgggatcagcctccacacag
ttggcgcagcaattttcttctttgcggttgcaaaaaagctcgacggtgtctgctaatcca
aaaccacctttatcacatactttacaacctgcaattgtttctgtgcctattgattctgtc
gctaatcaagaggcaactgtttcacaatctttgcaaaccacaaattctcatcattccact
ggtgtgacaactgctgtttcatcctcacctagttttctacatgctcgaagtattgcacct
gcaggcatgcttcggcaaccttcttacatcacaggatttggggctgccttgaacattgaa
acacttgttgcagcagctgaaagaagagacactccaatagaggctcctgcaccagaagtt
caggataaaatattattcatgataaataacatttcaacttcaaatatggatgctaaagca
aaagaatttaatgaggttgtcaaagagcagtactacccttggtttgcacagtatatggtg
atgaaaagagcaagcattgaaccaaattttcacaacttgtatttgaagttcctagacaaa
gttaactcaaaatcacttaataaggaaattgttaaaactacttatgaaaactgcaaggtg
ttattgagatcggatcttataaaatcaagttcagaagagcgttccttgcttaaaaatctc
ggtagctggcttgggaagttcacaattggtaaaaatcaagcattacgagccaaagaaata
gatccaaaagttttaataatagaggcatatgaaaagggattgatgattgcggtgattcca
tttacctctaagattctggaaccatgccattccagtttagcgtatcaacctccaaatcca
tggactatgggcatccttagtttacttgctgagatatataacctgccaaacctcaaaatg
aacttaaaatttgacattgaggttttatttaagaacctgggcgtggacatgaaagaagtt
aaaccaacttctcttcttaaagatagaattcgtgaagtgcaggggaatccagatttttca
aacaagtatgtggctgcatcccggccacaagtcattgctgaagttaactcaggcattatg
ccaacattgaatcatgttgagatgcaacctgatgtcagcagtgcatcttatccaagaacc
gatccaaagatactggctcagtatacttctccccatcttgcttcaaataccatggtggag
tatgacaaagctggaggtttaattgaacctgaacgcattccatctggtcagggactaagt
caagttacaccatcaccattttctctaagtcagcttctgacaataattccaaattctgat
tcctatattaatatcaatcccaagcttagttctattggttcccagttgcaatttcacaga
attattcaagctgctatggatagggccatcaaagaaattctctctcctgtcattcagcgc
agtgttacaatagctagtcggacaactaaagaacttgttctaaaggactatgctatggag
tcagatgatggtattatatctcgtgcggcacatttaatggttggcactttggctggaagt
ttagctcatgtcacatgcaaggagcctcttcgtgctgctctatcaagtcaccttcgaagt
ctacttcagagcttaaatattactagtgaacgaatagagcagattattcagattcttaca
accgatcatctagatcttggctgtgctttgattgaaaatgttgcatcacagaaggccgtg
gagctgattgatggtgagataagtccctcttttgctgcactaaggaaacagagggaaaca
tctggctctgcttactatgacgccggtacctatgctcaaggtccatttgcacgtgtgcca
gaggcacttcgccccaagcctggtcgactgtcccttgcccaacagcaagtctacaatgac
tttatcaagaatatatggcaaaatcaatctagtcaaaattcaagtgctgtgccttctggt
ccgcctggtttggctggtagctcaagcaaccaaatcctgtctcatatttatacttcaagt
tcagccccgctgaattccagtgcctactcaacttcacaagtacctccattcagatcggta
gctgagcacctggatatgattgcagaagaatcagatcatggttcagcacaacttcttagt
gcctctcaaactcatattggggcagatgataatgttatccaacatggtggcgaagttgat
tctgttgcggtgtcatttcccgctgctacttgccctgatctgcaggttctgggatctgtc
gtaccatcatcacctgcaacttctgcagcagatcgactgggaactgtattacctgaatca
atgttgaatactggagatgcattgtataagtatcaacaagttgcacaaaagctggaagct
ttgattgccaatgatgacagagatactgatattcagggaattgttgctgaggttccagat
atcatactcagatgcgttagccgagatgaggctgcactggctgtttctcagaaggttttc
aaaagtttatatgagaatgcatcaaatggtactcatgttgcctcctacctagcaattctt
gctgccatacgagatgtttgcaagcttgttgtcaaagaactaacaagctgggttatatac
tcggatgaggagcggaagttcaataaagatgtaacaattggtcttattcgttctgagttg
ctaaatcttgcggagtatgatgtccatctggcaaaacttattgatggagggaggaataaa
gttgctacggagtttgcgatatccattttcgaagcattggtagttcaggaaactgtagtc
cgtgcatcagaactgtacaatctcatggaagccttgaccaaggtagcgatgaggccaggg
tcacgggagtcattgcagcagctagttgagattgcccgaaatagcatgaacactgctccc
aacattactgctagcgagaagcccaggcaatctagggataataaaaaggtactttctggt
cgttccttggcaaatagagaggattataatgctaatgatcctacagtggcagagcctgct
ggcttccgagatcaggttggtcttctctttagtgattggtgtcagatttgtgatcttcca
gctacaaatgattcagcatatagtcattacatctcacagttgcaacaatgtggtctgctt
gagggtgatgatattacagaccggttcttccgtattctgatggaagattctgtttcacat
tgtatacttcctgagcaagtcagttctccaggcccagtgtcactccaatcagttcagcag
ctgcaacaactccagcagctcccctacttttccattgattcatttgcaaagcttgtggcg
ctagttctgaagttctgttcagtagatcaaggatcaagtaaagctatacttctccccaag
atactgtcagttactgtaagagtcatccaaaatgatgcagaagagaagaagctgtctttc
aacccaaggccatacttcaggctgtttattaactggcttttggaccttgcttctccagat
cctgtccttgacagtgccaactttcaggtgttgacttctttcgcaaatgctctccatgct
ttgcaacccatgaaggttcctggttggagctttgcatggctcgagttggtgagccacaga
aacttcatgccaaaattgctgacatgcaattctcccaagggttggccatttttccagcgt
ttgcttgttgacttgttcaaatttatggagccctacttgagaaatgctgagctgggagaa
ccagttcgttttctgtacaaaggcacactgcgggtgctgcttgtactgcttcatgatttc
cctgagtttctctgtgactatcacttcagtttttgcgatgtgatccctcctagttgcatt
caaatgcggaatgttattctcagcgcattcccttgtgatatgaggcttcctgaaccttcc
acccccaacttaaagattggtcttctagctgaaattagccaatccccacgcattctatct
gatgttgacggtgctctcaaggctaagcagattaaggccgagattgatgagtatctcaag
acaagatcagaaggatctccctttttaactgaactgaagcaaagattgctgctccctcaa
aatgaggcgaacctggcaggcacccgttacaatgtacctctgatcaactcacttgtgctt
tatgttggcatgcaggctatacaacaactgcagagcaagtctaccgctcatcatgcacct
gcacagcaaatgacccatagccctctgatggatatttttctagttggagcagctatggat
atattccagatcctaataaaaaacttggatacagaaggtcgctacctctttcttaatgca
gttgccaaccagttgcgctacccaaacatccatacacactacttcttgtttgtccttctg
tacttgtttgcagaggctagcgaggatatcatccaggagcagataacacgggtgctggta
gagcgcttgatggcttaccgtcctcacccatggggtgtgcttgtcactttcatcgagctg
atcaagaatccacggtacagcttctggaacaagtcattcacacgctgtgcaccagagatt
gaaaagctatttgaatcagtttcgagatcttgcggtggtccaaaagctgtggacgatgga
atggtctccagcggcatctccgatggcaaccattga
DBGET
integrated database retrieval system
