Edwardsiella ictaluri: NT01EI_0174
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Entry
NT01EI_0174 CDS
T00912
Name
(GenBank) DNA-directed RNA polymerase, beta subunit, putative
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NT01EI_0174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eic03021
]
NT01EI_0174
03400 DNA repair and recombination proteins [BR:
eic03400
]
NT01EI_0174
Enzymes [BR:
eic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NT01EI_0174
Transcription machinery [BR:
eic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NT01EI_0174
DNA repair and recombination proteins [BR:
eic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NT01EI_0174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ACR67421
UniProt:
C5BHE3
LinkDB
All DBs
Position
168993..173021
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDFTTEQILDLFFDKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVTLIEVPVEYIVGKVAAKD
YIDESTGELICAANMELSLDLLAKLSQSGYKRIDTLFTNDLDHGPYMSETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLMRDEIEGSGIL
SKNDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDMLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGIVT
DEIHYLSAIEEGNFVIAQANSNLDDEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGMVQYVDASRIVIKVNEDEMFPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTSIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHDVLVAGGVEAEKLEKLPRDRWLELGLADEAKQNQLEQLAEQYDE
LKAEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGDNTRQQVDLNTFSDDEVLRLAENLKKGLPVATPVFDGAKEREIKGLLE
LGGIPTSGQITLYDGRTGERFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGSHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggactttggtaagcgtccccaa
gtgctggacgtaccatacctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggtcagtacggtctggaagcggctttccgctccgtattcccgatccag
agctacagcggcaactccgagctgcagtatgtcagctatcgcctaggtgagccggtattt
gatgtcaaagagtgtcagatccgcggcgtaacctattctgctccgctgcgcgttaagttg
cgtctggtgatctacgagcgtgaggcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggtgaaatcccgctgatgaccgaaaatggtactttcgtcatcaacggc
accgagcgtgttatcgtgtctcagctgcaccgcagcccgggcgtatttttcgacagcgac
aagggtaaaacccactcttcaggtaaggtgctgtataacgcacgcatcattccttaccgc
ggttcctggctggactttgagttcgacccgaaagacaacctgtttgtccgtattgaccgt
cggcgtaagctgccggctaccatcatcctgcgcgcgctggatttcactaccgagcagatc
ctcgatctgttcttcgataaggtgatctttgaaatccgcgacaataagctgcagatggag
ctggtgccggagcgtctgcgcggtgagaccgcctcttttgatatcgaggccaacggtaag
gtctacgttgagaaaggccgccgtattactgcccgccatatccgtcagctggaaaaagat
gacgttacgctgatcgaagtaccggttgagtatattgtcggtaaagtggctgccaaagat
tacatcgacgagagcaccggtgagctgatttgtgccgccaacatggagctgtcgctggat
ctgctggccaagctgagccagtctggttacaagcgtatcgacacgctgttcaccaacgac
ctggatcacggcccgtatatgtccgagaccctgcgcgtcgatccgaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgcccgggcgagccgccaacccgcgaagcc
gccgagaatctgttcgagaacctgttcttctccgaggatcgctacgatctctctgcggtt
ggccgcatgaagttcaaccgttctctgatgcgcgatgagatcgaaggttccggtatcctg
agcaaaaacgacatcatcgaggtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtcgacgatatcgaccacttgggcaaccgtcgtatccgctctgtgggtgagatggcg
gaaaaccaattccgtgtgggtctggtacgtgttgagcgtgcggtgaaagagcgtctgtcc
ctgggcgatctggatatgctgatgccgcaggatatgatcaacgccaagccgatttcggcg
gcggtgaaagagttctttggctccagccagctgtcccagtttatggaccagaacaacccg
ctgtccgagatcactcacaagcgtcgtatctccgcgttgggcccaggcggtctgacccgt
gagcgtgccggctttgaagtgcgagacgtacacccgacccactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtctgtgtacgcacag
accaacgagtatggtttcctggaaactccgtatcgccgcgtgcgtgacggtatcgtgacc
gacgagatccattacctgtctgccatcgaagaaggcaacttcgttatcgcccaggcgaac
tccaacctggatgatgaaggccgctttgtagaagatctggttacctgtcgcagcaagggc
gaatccagcctgttcagccgtgaccaggtcgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcgtccctgattccgttcctggaacacgatgatgccaaccgtgccctg
atgggtgcgaacatgcagcgtcaggccgtgccgaccctgcgcgccgataagccgctggtt
ggtaccggtatggagcgcgccgttgcggttgactccggtgtaacctccgttgccaagcgc
ggcggtatggtgcagtacgtggatgcgtcccgtatcgtcatcaaggttaacgaagatgag
atgttcccgggcgaagctggcatcgacatctacaacctgaccaagtacacccgttccaac
cagaacacctgtatcagccagatgccgtgtgtctcgctgggtgagccgattgagcgcggc
gacgtgttggccgacggcccgtccaccgatctgggtgagctggcgctgggtcagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcttggtctccgag
cgcgtggtacaggaagatcgctttacctctatccatattcaggagctggcctgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgccgatatcccgaacgtcggtgaagcg
gcgctctccaagctcgatgaatccggtattgtgtatatcggcgccgaagtgaagggtggc
gacatcctggtcggtaaggtaacgccgaaaggtgaaacccagctgacgccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcgtctgacgtgaaagactcttctctgcgtgtg
ccgaacagcgtttccggtaccgttatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaagcgtgcgctggaaatcgaagagatgcagctcaagcaggccaagaaagacctg
accgaagagttgcagatcctggaagccggtctgtttgcccgtatccacgacgtgctggtt
gccggtggcgtggaagcggaaaaactggaaaaactgccgcgtgaccgttggctggagctg
ggcctggccgatgaagccaagcagaaccagctggagcagctggccgagcagtacgatgag
ctgaaggctgagttcgagaagaaactggaagccaagcgtcgtaagatcacccagggcgac
gatctggcaccgggcgtgctgaagatcgttaaggtgtacctggcggtgaaacgtcagatc
cagccgggcgataagatggctggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgagaacggcacgccggtcgatatcgtactgaacccg
ctgggcgtaccgtcacgtatgaacatcggtcagatcctggaaacccacctgggtatggcg
gcgaaaggcatcggcgacaagatcaacgccatgctcaagcagcagcaggaagtggccaaa
ctgcgtgagttcatccagagagcctacgatctgggtgacaacacccgtcagcaggtggat
ctgaacacctttagcgatgacgaagttctgcgtctggcggaaaacctgaagaagggtctg
ccggttgcaacgccagtgttcgacggtgctaaagagcgcgaaatcaagggcctgctggag
ctgggtggtatcccgacctctggccagatcaccctgtatgatggccgcaccggtgagcgt
ttcgagcgtcaggtaaccgtgggttacatgtacatgctgaaactgaaccacttggtcgac
gacaagatgcatgcgcgttccaccggctcctacagcctggttacccagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagct
tacggcgccgcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcagccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctgggcatcaacatcgagctggaa
gacgagtaa
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integrated database retrieval system
