Entamoeba invadens: EIN_371320
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Entry
EIN_371320 CDS
T04133
Name
(RefSeq) CCR4-not transcription complex, putative
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
eiv
Entamoeba invadens
Pathway
eiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIN_371320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eiv03019
]
EIN_371320
Messenger RNA biogenesis [BR:
eiv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EIN_371320
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EIN_371320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
Mso1_Sec1_bdg
Motif
Other DBs
NCBI-GeneID:
14891752
NCBI-ProteinID:
XP_004259491
UniProt:
A0A0A1UBY2
LinkDB
All DBs
Position
Unknown
AA seq
1373 aa
AA seq
DB search
MSGDNLVGQMVQLVSTIQNNLFKKQYGPVKAPLYNKRPGNSTTITYPTSLDEFSFSSRPI
SNNAFHLEINEEVAHKFTDKLQAHDWDEIISQLDDQNHNTPTPTLAHQILKMYYATNTRP
FPINLFIAPWKNPQTQLHYLLSFAFDGDLFPDVIEPICSMYSLSKISVIGTIYCILQCNP
AAFPLVASINSPPTIIALGKYFHFLLSSNNFLEVEKMLPLFPSATAAALKNEINASPIMK
NAIVRYLSSSKAPLDSFNMLGIKTLDGVFISLSLVKNNVVSMKGWATACRWAKEIVRCNE
DEIRGYFNEDLANRAIAAFSVETGELISKIEVVEIRTLFNSIGGLSKMSKMNGKKEYELF
IKLILNSCDKIFENEEDAIFVGDIVGDIIEESILPVHLIVHLLKNVYQSLQRPGTQFEFG
VAALKKFWRKMRQWKTYGRMVLENKRLISKHQDIIKQVVMRSETIPYVTNEEVSQRVSEL
KTLSTEVYQLMKSVFELFEDNSVAAINQFVAYSKSKAITGIADIIVYMSLAKIDLLPRFL
ELIDGHHKVLHSQLWNFVVGELDRVIKRLLSQQLTPVDAVVLHRTGVIMGKVTLGKNRPI
LTKRFDLKYLLRDSLSHTWCCDFVFFVIQIVKEARGVFTRQNPWLVKILMTLRAVYDAMP
PSTAIYGELHKLFVQFPCDLTIELKNEEKRVIATSEIAGELLNIEAIVKRGVTQKYVEAY
YGRRLTTPMWTDSNFPTFFPSFLITEVFGRSEWVVIFSLIYEIFSVKFSEKKAQSVESVV
SLLRLTVIRDTKRSPREIAKRCVLSFVAKMGRMVFLTQATGVISKIVKTELDKWRLGFDE
KMREGDINSAKKEEISFGVVCHTPQLFEKWVIAPFEEFCVAKFVDDCMKTTTRRVVEEIE
RRDTLPFDDKINSYLTHPQMIARTALLPSQQILYDFEEVECTLYGNLPAKREHQLFKKIE
IGKNSDSELEAISKSLDMEYSYGLYAYCFLDEMIEEKKAFDENVLSGHLFGVTSRSASLV
RALDSLFEGLFWVLLKNSQDNEITSKIRGIVEYFHTQFVNGERDEKEQNAFFTCVGRFMK
NSEPKGMPGFAYNWVDMITPSFIVNRVENAPEKFTELTKNLLQFVSNIIGNEKDIPHSIL
VFYASVLRIVAVIRHDFPEYLAEYFVDYLEVIPYRLGQLRSFVLTATPPGLNFSVNIAFN
ENECVHVPPIIKSKLAFAAEGEVDAFIYSGEERLLPLILEKVKCDYLRLATYLAQKREDK
IHSDSISQLLYYLVFNLDVAERDLMLNAIVDNLRFPNSHTLYFSVIIQMFFSANEVLAEQ
ITKILMERLLVSKPLQVGVVVTVIELINVKRYDLTNKDFFKKCKKLCSLLGIH
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcgataatttagttgggcaaatggtccagctcgtgagcacaattcaaaacaat
cttttcaagaaacagtatggcccagttaaggcgccactttacaacaaacgccccggcaac
agcactacaataacctacccaacatcgttggacgagttttcgtttagttctcgtccaatt
agcaacaacgcgttccacctcgaaataaatgaagaagtcgcgcacaaatttaccgacaaa
ctgcaagcgcatgactgggacgaaataataagccaactcgatgaccaaaatcacaacaca
ccaacgccaacactcgcacatcaaatactcaaaatgtattacgcaacaaacacacgtcct
tttccaatcaaccttttcatcgccccttggaaaaatccacaaacacagttacattatttg
ttgtcctttgcgttcgacggagatttgttcccagacgtcattgaaccaatatgctcaatg
tactctctttcaaaaataagtgtcattgggacaatatactgtatacttcaatgcaaccca
gcagcatttccgctcgttgcttcgataaattctccaccaacaatcattgcgcttggaaag
tatttccacttccttctttcgtcaaacaacttccttgaggtcgaaaaaatgctcccgttg
tttccttcggcaaccgcagcggctttgaaaaacgaaattaacgcgtcaccaattatgaag
aacgcaattgtcagatacttgtcctcttcaaaagcaccactggactcattcaatatgctt
ggcattaaaacgctcgacggcgttttcatatcgctttcccttgtgaaaaacaatgttgta
tcaatgaaagggtgggcaactgcttgcaggtgggcgaaggagattgtacggtgcaacgaa
gatgaaattcgtgggtacttcaatgaagatttggcaaaccgagcgattgcagcgttttct
gtcgaaacaggagagttgatatcaaaaatagaagttgttgagattcggacgttgttcaat
tcgattggagggttgtcgaaaatgagtaaaatgaatggaaagaaagagtacgaattgttc
attaaattgattttgaacagttgcgataaaatattcgagaacgaagaagatgcaattttt
gtgggggacattgtgggggacatcatcgaggagagtatcttgcctgtccacttaattgta
catttacttaaaaacgtgtatcagtcgttgcaacggcctggcacccaatttgagtttggt
gtcgctgcactgaaaaagttctggagaaagatgcggcaatggaagacatatggcagaatg
gttttagaaaacaagcgtttaatttccaaacaccaagacatcatcaaacaagttgtgatg
cggtcggaaacaattccgtacgtcacgaacgaggaagtttctcaacgggtttcagaatta
aaaacattatcaaccgaggtttatcagttaatgaagagcgtgttcgagttgttcgaagat
aattccgtcgctgctatcaaccaatttgtcgcgtacagcaaatcgaaagcgatcactgga
atcgctgacatcattgtgtacatgtcgttagccaaaattgacttgcttccccgttttctc
gaattgattgacggtcaccacaaagtgcttcattctcagttgtggaattttgtcgttgga
gaattggatcgcgtgatcaagcgccttctgtctcaacaactaaccccagtcgatgccgtg
gttttacaccgcactggtgttataatggggaaagtgacattgggcaaaaatcgtcccatt
ttgacaaagcggtttgatctgaagtatcttttacgagactcattaagtcacacgtggtgc
tgcgactttgttttctttgtcattcaaatcgtcaaagaagctcgtggcgtttttacgcgg
cagaatccatggttagtcaaaatcctcatgacgctccgtgccgtgtacgatgctatgcca
ccatcgacggccatttacggcgagcttcacaagctttttgtacaatttccatgtgactta
actattgaattgaagaatgaggaaaaacgtgtcattgcgacgagtgagattgctggtgaa
ttgttgaacattgaagctattgtgaagcgtggagtcacacagaagtacgtggaagcgtac
tatgggcgtcgtttaaccaccccgatgtggacggattccaacttcccaacattcttcccc
tcttttttgatcactgaagtatttggccgttccgaatgggttgtcattttttcactcatt
tacgagattttttcggtgaaattttcagagaaaaaagcccagtcagtcgaaagtgttgtt
tctttgcttcggttgactgtgattcgagatacaaagcgttcgcctcgtgagattgcaaaa
agatgtgttttgagttttgtggcgaagatggggcggatggtatttttgacccaagcgacg
ggggtgatctcgaaaattgtcaaaacagaacttgataagtggagattgggctttgacgaa
aagatgcgagagggtgatataaatagcgccaaaaaggaggaaatttcatttggcgttgtc
tgtcacacgccacaactctttgaaaaatgggtcattgcgccatttgaagaattttgtgtt
gcgaaatttgtcgacgattgtatgaagacaacgaccaggagagtcgttgaggaaattgag
agaagagacactttaccctttgacgataagattaatagttacttgacacatccacagatg
attgccagaactgcactattaccaagccaacaaatattgtacgactttgaagaagttgaa
tgtacactttacggtaacttaccagctaaaagagagcaccagctgtttaagaaaatcgag
atcggtaaaaacagtgacagcgagttggaggcaatttccaaatcacttgacatggaatac
agctatgggttgtatgcatactgtttcttggatgaaatgatcgaggaaaaaaaggcgttc
gatgaaaacgtgttgagtgggcacttgtttggagtgacttcaagatcggcctcactggta
agagcactcgactcgttgtttgaaggactcttctgggtgttgttaaaaaatagtcaagat
aatgaaatcacgtcgaaaatacgcggaattgtggagtatttccatactcagtttgtgaac
ggagaacgcgatgaaaaggagcaaaatgcgttctttacgtgcgttggaaggtttatgaaa
aacagcgagcccaagggcatgcccggatttgcgtataattgggtcgatatgatcactcca
tcgtttatcgtcaatcgtgtcgaaaatgcaccagagaaatttacggaattgacgaaaaat
ttactgcaatttgtctcaaacatcatcgggaatgaaaaggatatcccacattctattctt
gttttctacgcgtctgtgttgagaatagttgctgttatacggcacgacttcccagaatat
ttggctgaatactttgttgactatcttgaggtcatcccatataggcttggacagctcaga
tcattcgttctaactgcaacaccccctggtctcaacttctctgtcaacatcgcgttcaac
gaaaacgaatgtgtacacgttccacccattattaaatcgaagttagcgtttgcagctgaa
ggagaagtcgacgcgtttatatatagtggagaggaaaggttgctcccattgattctcgaa
aaagtgaaatgcgactacctgagactcgcaacgtacctcgctcaaaagagagaagacaaa
attcacagtgactccatctcgcaattgctctattacttggtgttcaatttggatgtagca
gagagagatcttatgctcaatgctatcgtagacaatttgagattccccaactcacacacg
ctgtacttttctgttattatacaaatgttcttctcggccaatgaagtccttgcagaacaa
attacaaaaatcctaatggagcgcctattggtatcgaagccactccaagttggtgtcgtt
gtcacagttattgagctcatcaacgttaaacggtacgacctgacgaacaaggacttcttc
aaaaaatgtaaaaagctctgttccttactcggcatacactaa
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