Embiotoca jacksoni (black perch): 138193996
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Entry
138193996 CDS
T10523
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138193996 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eja03019
]
138193996 (ddx61)
03036 Chromosome and associated proteins [BR:
eja03036
]
138193996 (ddx61)
Enzymes [BR:
eja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138193996 (ddx61)
Messenger RNA biogenesis [BR:
eja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138193996 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
138193996 (ddx61)
Chromosome and associated proteins [BR:
eja03036
]
Eukaryotic type
Gene silencing
piRNA pathway
138193996 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
138193996
NCBI-ProteinID:
XP_068998444
LinkDB
All DBs
Position
Unknown
AA seq
488 aa
AA seq
DB search
MATARTANPAPMIGLSRPANGQLRGQTKPAGQQSGLLSSVQQSSALQKRTGIPQSSGGIK
FGDDWKKCLELPARDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQMSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDRTQMMVMDE
ADKLLSQDFVVLIEDIISFLPKGRQILLYSATFPISVQKFMNKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSDDRYNLKTIEDQLVTDIKPIPGSIDKSLYVAEFHCVDPDDDCDEGGA
KNKDLGAA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccagcaccaatgattggactgagcagaccagcaaac
gggcagctcagaggacagaccaagccagctggacaacagtcaggactcctttcaagtgtc
caacagtccagtgccctccagaaaagaaccggcattcctcagagcagcggtggcattaag
tttggtgatgactggaagaagtgcctggagcttcctgctcgggacaccagggtgaaaact
tcggatgtgacctcaactaagggaaatgaatttgaagactactgcttaaagcgagaactt
ctaatggggatctttgaaatgggatgggagaaaccttcccctattcaggaggaaagcatc
ccaattgctctatcaggtagagatattttggcccgggccaaaaatggtacaggaaaaagt
ggagcctacctcatccctctcctagagaggatagacctgaagaaggatcacattcaggcc
ttagtaatggtaccaacaagagagctggccttgcagatgagccagataagcattcagatc
agtaagcacctgggaggggtcaaggtcatggctaccacaggtggaaccaacttgagggat
gacatcatgcgtcttgatgagatagtgcatgtggtgattgccacaccaggcaggatacta
gacctgatcaagaagggtgtggcaaaagtggataggacccaaatgatggtgatggatgaa
gcagataagttgctgtcccaggactttgtggtcctgattgaagacattatcagcttcctg
ccaaaaggtcgtcagattctgctttactctgccacgttccccataagtgttcaaaaattc
atgaacaagcacctgcagaagccctatgaaatcaacctgatggaagagctgacattgaag
ggcatcactcagtactatgcttatgtgacggaaagacagaaggtccactgccttaacacg
ctcttttctaggctccagatcaatcagtctatcatcttctgtaactccactcagagagtt
gagctgctggcgaagaaaatcacccagctgggctactcgtgcttctacattcatgcaaag
atgatgcaggagtacaggaaccgcgtgttccacgacttcagaaatggactgtgcagaaac
ctggtctgcacagatctattcactcggggaattgacatccaggcggtaaatgtggtcatt
aattttgacttccccaaaaatgccgagacctacctgcaccgaattggcagatcagggcgt
tttggtcacctgggtctggccatcaatctgataacttcagatgatcgctacaacctgaag
actattgaggatcagctggtcactgacattaagcccatccccggcagcattgacaagagc
ctgtacgtggcagagtttcactgtgttgacccggatgatgattgcgatgaagggggagca
aaaaacaaggatctgggagcagcctga
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