Eumetopias jubatus (Steller sea lion): 114205613
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Entry
114205613 CDS
T07240
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
eju
Eumetopias jubatus (Steller sea lion)
Pathway
eju03008
Ribosome biogenesis in eukaryotes
eju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eju00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
114205613 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
114205613 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eju03019
]
114205613 (XRN1)
03009 Ribosome biogenesis [BR:
eju03009
]
114205613 (XRN1)
03016 Transfer RNA biogenesis [BR:
eju03016
]
114205613 (XRN1)
03036 Chromosome and associated proteins [BR:
eju03036
]
114205613 (XRN1)
Messenger RNA biogenesis [BR:
eju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
114205613 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
114205613 (XRN1)
Ribosome biogenesis [BR:
eju03009
]
Eukaryotic type
Pre-60S particles
RNases
114205613 (XRN1)
Transfer RNA biogenesis [BR:
eju03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
114205613 (XRN1)
Chromosome and associated proteins [BR:
eju03036
]
Eukaryotic type
Gene silencing
piRNA pathway
114205613 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
114205613
NCBI-ProteinID:
XP_027954921
LinkDB
All DBs
Position
Unknown
AA seq
1743 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKTYKEKKKSKGQENAICWAALDKNGEVVTSKDNLEDETE
DDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMC
WYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRVDQKALYFCGFPT
LKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIASSVLGKSVFVNWPH
LEEARVVGISDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEYY
LRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFDS
RFSNIKTLDDLFPPRSMVFMLGTPYYGCAGEVQDSGDVITEGRIRVVFSIPCEPNLDALI
QNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENE
NGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFE
VLFDEEFPGGLTIRCSPGRGYRLPTSALVNLTHGSRSETGNQKLTAIVKPQPAVNHYSSN
SSISSGHLGGLNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKVQHFQPTLQEKVAVLP
QEVSQVTQHHKSGFTDNSIKCQQRKHEPHRKFKEECKSPKTESRLQKLSNKQMLGGPAKC
NIKLLKRNESAEVSENQKVVTSYSNAIDKPNPGIENFLASLNISKENEVQSSHHEEPPSE
ELLSPQSFAMKGTRMLKEILKIDGSDAVDHKNEMKQFGNEVTVSSNRRDEYGPSSQAKQN
KKLTSYMNKPHSTSEYHNVQSMDHVCWPAPSHIPPVSTPVTELSRICSLVGMLQPDFSFL
RTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGVNFPLPPPIFPNYP
PAVPPGTVPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHHTS
YSGTMPMAGGMPGGVHNQFIPLQVTKKRVANKKNFESKEVQNSQATPLQTSQPGSSIVTK
VIPQESSSASLKSSQITQPASSFQAEAASQGHSMSHHKSTPSSSSRRKSRKLAVNFGVSK
PSE
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgataacttgtacctggatatgaatggaatcata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgggggagg
cgttttaggtcagcaaaggaggcagaagacaaaataaaaaaggcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccagggactgaattcatg
gcccggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataagtcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagagcataaa
atcatggaatttatcagatcggagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcacgaggcacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaagacacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagtattgaaagacaagatcacttttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacgtatattaccatcctgccagaa
cttggtggttatattaatgaaagtgggcatctcaacttacctagatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagacctacaaggaaaagaaaaaatcaaagggccaggaaaatgccatttgttgggct
gctttagacaaaaatggagaagtggtaacttctaaggataatttagaagatgagactgaa
gatgatgacctatttgaaactgagtttagacaatataaaagaacatactacatgacgaag
atgggagttgatgtagtgtctgacgactttctggctgatcaagctgcatgttatgttcag
gcaatacagtggattttgcactattactatcacggagttcagtcttggagctggtattat
ccctaccattatgcacctttcctatctgatatccgtaacatcagtacactcaaaatccat
tttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagcagct
agcaaaaatttacttcctacatgctaccagcacttgatgaccagtgaagactcaccaatt
atagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgggaa
gctgtggtactaataccttttattgatgagaagcgattgttggaagccatggaaacatgt
aaccactccctcaaaaaggaagaaaggaaaagaaaccaacatagtgagtgcctaatgtgc
tggtatgatagagacacagagttcacttacccgtcaccatggccagaaaagttccctgcc
atagaacgttgttgtacaaggtataaaataatatcattagatgcttggcgtgtagacata
agcaagaacaaaataaccagggttgaccagaaggcactgtatttctgtggatttcctacc
ctgaaacacatcaaacacaaattttttttgaagaaaagtggggttcaagtattccagcaa
agcagtcgtggagaaaacatgatgttagaaatcttagtgaatgcagaatcagatgaactt
agcgtagaaaatatagcttcatcagtgcttggaaagtctgtctttgttaattggcctcat
cttgaagaagctagagttgttggtatatcagatggagaaactaaattttacttggaagaa
cctccaggaacacagaagctttatttgggaagaactgccccaccatctaaagtggtccat
cttggagacaaggaacaatctaactggacaaaagaagtacaaggaatttcagaatactac
ctaagaaggaaaggaataataataaatgaaacatctgcagttgtatatgctcagttactc
acaggtcgtaaataccaaataaatcaaaatggtgaagttcgtctagagaaacaatggtca
aaacaagttcttccttttgtttatcaaactattgtaaaggacatccgagcttttgactcc
cgtttctccaatatcaaaacattggatgacttgtttcctcctagaagtatggtctttatg
ctgggaaccccctattatggctgcgctggagaagttcaagattcaggggatgtgattaca
gaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgctttaata
cagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgtctt
ggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagaggatct
aggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaacaaa
aaaaatgaggaggtacctggatataccaagaaagttggaagtgagtggatgtattcatct
gcagcagaacaacttcttgcagagtacttagagagagctccagaactatttagttatata
gccaaaaatagccaagaggatgtattctatgaagatgacatttggcctggagaaaatgag
aacggtgccgagaaagttcaagaaattattacttggctaaagggacatcctgtcagtact
ttgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaattgag
gaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgacagtgaag
ccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagatgca
gaatttcgtctctttgaccgtgtggtaaatgtgagagagaacttttcagttccagttggc
cttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactatttgaa
gtattatttgatgaagaatttcctggaggcttaacgataaggtgctctcctggtagaggt
tatcgactgccaacaagtgccttggtgaatcttactcatgggagtcgctctgaaaccgga
aatcagaagttgacagccattgtgaaaccacaaccagctgtgaatcactatagctcaaat
tcatcaatttcatctgggcatttgggaggcctgaaccattcccctcaatcactttttgtt
cctactcaagtacctactaaagatgatgatgaattttgcaacatttggcagtccttacag
ggatctggaaaggttcaacactttcagccaactctacaagagaaggttgcagttctacct
caagaagtaagtcaagtaactcaacatcataaatctggctttactgacaacagtattaaa
tgtcagcaaagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcctaaa
actgagagtcggttacaaaaactgtcaaataagcagatgcttggagggcctgccaaatgt
aatattaagctattgaagagaaatgaaagtgcagaagtctcagaaaaccagaaggttgtg
accagttactcaaatgctattgataagcctaaccctggaattgagaactttttagcatcc
ttgaatatctccaaagaaaatgaagtacagtcatctcatcatgaagagcctccaagtgaa
gaacttttgtcaccacaatcttttgctatgaagggaactcggatgcttaaagaaatacta
aaaattgatggctctgatgctgtggaccataaaaatgaaatgaagcagtttggtaatgaa
gtcactgtttcctctaatagaagagatgaatatggaccttcctcccaggctaaacaaaat
aagaaattaacatcttatatgaataagccccacagtactagcgaataccataatgttcag
tctatggaccatgtgtgttggcctgctcccagccatatccctcctgtgtccacaccagta
actgaactttctcgaatttgttcccttgttggaatgctacaaccagatttctcctttctt
agaacaccacagacaatgacagtttgccaggtaaaattatctaatggcttactggtacac
gggccacagtgccattctgaaaatgaagccaaggaaaaagccgcactttttgctttacaa
caattgggctccttaggagtgaatttccctttgcctccaccaatatttccaaattatcct
cctgctgtaccacccggaaccgttccccctgtttttcctcaacctactggctgggatcac
tatggaagcaacttagcattgggggcagctaatataatgccttcatcatctcatctcttt
ggctccatgccatggggaccaccagtgccagttcctgggaagccatttcatcatacttca
tattctgggaccatgcccatggctgggggaatgccaggtggtgtgcacaatcagttcata
cctctacaggttactaaaaaaagggttgcaaataaaaagaactttgagagtaaggaggtc
cagaattctcaagctaccccgcttcagactagccagccagggtcttccattgtcaccaaa
gtgattccacaggagagttcatcagcttccttaaagtcctctcagattactcaacctgca
tcttcttttcaagctgaagctgcctcccaaggccatagtatgtctcatcacaagtccaca
ccaagctcatcttcaagaagaaaatcaagaaaactggccgtcaattttggcgtttctaaa
ccttctgaataa
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integrated database retrieval system
