Enhydra lutris kenyoni (northern sea otter): 111149241
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Entry
111149241 CDS
T05871
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03020
RNA polymerase
elk03420
Nucleotide excision repair
elk05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111149241
09124 Replication and repair
03420 Nucleotide excision repair
111149241
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
111149241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elk03021
]
111149241
03400 DNA repair and recombination proteins [BR:
elk03400
]
111149241
Enzymes [BR:
elk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111149241
Transcription machinery [BR:
elk03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111149241
DNA repair and recombination proteins [BR:
elk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111149241
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
111149241
NCBI-ProteinID:
XP_022361906
UniProt:
A0A2Y9JMS8
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaagatgatgatgaaatcaccccagac
ttgtggcaagaagcatgctggattgtaatcagttcctattttgatgagaagggcttggtc
agacaacagctggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctgcaagctgaagctcagcatgctagtggagaagttgaagaa
ccgccaagatacttgctgaagtttgagcaaatttacctctccaaacctacccattgggaa
agagatggtgctccttcaccaatgatgccaaatgaggccagattaagaaatctcacgtat
tctgctccactttatgttgatataacaaaaacagtcattaaggaaggtgaagaacaactt
caaactcagcatcagaaaacttttataggaaaaattccaattatgttgcgttcaacttac
tgcctcttgaatggcttaacagatcgtgatctttgtgagttaaatgaatgccccttggat
cctggtggatatttcattattaatggatcagaaaaggttctgattgctcaagagaaaatg
gcaacaaacacagtctatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcatgtttggagaattcatcccggcccaccagtactatttgggttagcatgctg
gcaagaggaggacagggtgcgaaaaagagtgctattggtcagcgcattgtggcaacccta
ccatatatcaagcaggaagttcccatcattatcgtgttcagagcattaggttttgtgtct
gacagagatattttagagcatattatttacgattttgaagatccagagatgatggaaatg
gtgaaaccttctctcgatgaagcttttgtcatccaggaacagaatgttgcactaaatttc
attggttcaagaggggcaaagcctggtgtcactaaagagaaaagaattaaatatgcaaaa
gaagtcttacaaaaagaaatgcttcctcatgttggtgtcagcgacttttgtgagaccaaa
aaagcttatttcttggggtacatggttcataggttgcttctagcagccttgggtagaaga
gaattggatgacagggatcactatggaaacaaaagattggatcttgctgggccactgctt
gcgttcttatttcgaggtatgtttaagaatttgcttaaagaagtacggatctatgcacag
aagtttattgatcgaggaaaggattttaatttggagttggcaattaaaacaaggattata
tctgatggcctaaaatactctttagctacgggaaactggggtgaccaaaagaaagctcat
caagccagagctggagtatctcaggtattaaaccgcctgacttttgcatcaactctttct
catctacgtcgtttaaattcacctattggtagagacggcaagctagcaaaaccaagacag
ttgcataatacgttgtggggaatggtgtgtcctgctgaaaccccagagggccatgctgta
ggacttgtgaagaatttagctctgatggcttatatttcagttggatctcagccttctcca
attttggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgccgatgcaaccaagatttttgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaacaccctaaggaaattgcggcgtcagatggacatcattgtgtctgaa
gtttctatgattagagatattcgagagagggagattcggatctatacagatgcaggccgt
atttgccggccacttctgattgtggaaaaacaaaaactacttttgaagaagagacatatt
gatcaattgaaagagagagaatataacaactacagttggcaggatctcgtggccagtggg
gtagtagaatatattgacaccctggaagaagaaacagtgatgcttgcaatgactccagat
gatttacaggagaaagaagtagcttattgttccacatatacacactgcgagatccaccca
tcaatgattcttggtgtctgtgcatctattattccctttcctgatcataaccagtcccct
agaaacacgtatcagtctgctatgggtaagcaggctatgggagtttatatcaccaacttc
catgttcgtatggatacactggcccatgttctgtattatcctcaaaaaccacttgtgact
acacggtctatggaatatctacgatttcgggagctgccagcaggtatcaactccattgtg
gccattgcatcgtacacgggatataaccaagaagactctgttatcatgaatcgttcagct
gtagacagaggctttttcaggtctgtcttctatcgatcgtacaaagaacaggaatctaaa
aaaggatttgatcaagaagaagtttttgagaagccaactcgtgaaacatgccagggtatg
aggcatgccatttatgacaagctggatgatgatggtttgatagctcctggagtccgtgta
tcaggagatgatgttattataggtaaaacagtcaccttgcctgaaaatgaagatgaattg
gagggcactaatagacgctacaccaagagagattgtagcacattcctgagaaccagtgag
acaggcattgtggatcaagttatggtaactctcaaccaggaaggatataaattttgtaag
ataagggtccgctctgttagaattccacagattggagacaaatttgctagtcgacatggt
caaaagggtacttgtggtattcagtacagacaagaggatatgcctttcacctgtgagggt
atcacccctgatatcatcataaatccccatgctattccctctcgaatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcagccaacaagggcgaaattggtgatgccact
ccatttaatgatgctgttaatgtgcagaagatttctaatctattatctgattatggctac
catcttagaggaaatgaggtcctgtacaatgggttcactggtcgaaaaatcacatcacag
atttttattggtcccacatattatcagcgtttgaagcatatggtggatgataagattcat
tctcgtgccaggggacctattcagatccttaatagacagcccatggagggtagatctcgt
gatggtggcctgcgttttggagaaatggaacgagattgtcagattgcccatggagcagcc
cagtttttaagggaaagattgtttgaggcatcagatccgtatcaggttcatgtttgcaat
ctttgcggaataatggcgattgctaacacaagaacccatacgtacgaatgccggggttgc
cgcaataaaacccagatttctttggtgcgaatgccttacgcgtgcaaactgctctttcag
gaactcatgtctatgagtattgcccctcgaatgatgagtgtttag
DBGET
integrated database retrieval system
