Enhydra lutris kenyoni (northern sea otter): 111161116
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Entry
111161116 CDS
T05871
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
elk
Enhydra lutris kenyoni (northern sea otter)
Pathway
elk03020
RNA polymerase
elk03420
Nucleotide excision repair
elk05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
elk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111161116
09124 Replication and repair
03420 Nucleotide excision repair
111161116
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
111161116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elk03021
]
111161116
03400 DNA repair and recombination proteins [BR:
elk03400
]
111161116
Enzymes [BR:
elk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111161116
Transcription machinery [BR:
elk03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111161116
DNA repair and recombination proteins [BR:
elk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111161116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111161116
NCBI-ProteinID:
XP_022380313
UniProt:
A0A2Y9L4L4
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSHKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggtggc
atcaaataccccgagaccacagagggaggccgccccaagcttgggggactgatggacccg
cggcagggggtgatcgagcggactggccgctgccagacttgcgcgggaaacatgacggag
tgtcccggccacttcggccacatcgagctggccaagcccgtgttccacgtgggcttcctg
gtgaagacgatgaaagtgttgcgctgcgtctgcttcttctgctccaagctgctcgtggac
tccaacaacccaaagatcaaggacatcctggccaagtccaaggggcagcccaagaagcgg
ctgactcacgtgtacgacctgtgcaagggcaagaacatctgcgagggcggcgaggagatg
gacaacaagttcggggtggagcagccggagggcgacgaggatctgaccaaagagaagggc
cacgggggctgcgggcggtaccagccccggatccggcgctcgggcctggagctgtacgcg
gagtggaagcacgtcaacgaggactcccaggagaagaaaatcctgctgagtccggagcga
gtgcatgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggagccc
cgctacgcgcggcccgagtggatgattgtcaccgtgctgcccgtgcccccgctgtctgtg
cggcccgccgtggtgatgcagggctctgcccgcaaccaggatgacctgacgcacaaactg
gcggacattgtgaagatcaacaaccagctgcggcgcaacgagcagaacggcgcggcggca
cacgtcatcgccgaggatgtgaagctcctgcagttccacgtggccaccatggtggacaac
gagctgcccggcttgccccgcgccatgcagaagtcggggcggcccctcaagtccttgaag
cagcggctgaagggcaaggaaggccgggtccgagggaacctcatgggcaagcgagtggac
ttctcggcgcgcaccgtcatcacccccgaccccaacctctccattgaccaggtgggcgtg
cctcgctccatcgccgccaacatgaccttcgcggagattgtcacgcccttcaacatcgac
agactccaggagttagtgcgcagggggaacagccagtacccgggggccaagtacatcatc
cgggacaacggcgaccgtatcgacctgcgtttccaccccaagcccagtgaccttcacttg
cagaccggctacaaggtggagcggcacatgtgcgacggagacatcgtcatcttcaaccgc
cagccgactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
actttccgcttaaatctgagtgtgacgactccttacaatgcggacttcgacggggacgag
atgaacttgcacctgccccagtccctggagacgcgggcggagatccaggagctggccatg
gtgccgcgcatgatcgtcaccccgcagagcaatcggcccgtcatgggcatcgtgcaggac
acgctcacggccgtgcgcaaatttaccaagagagacgtctttctggaacggggagaggtg
atgaacctgctgatgttcctgtccacgtgggacgggaaggtgccgcagccagccatcctg
aagccacggcccctgtggacgggcaaacagatcttctccctcatcatccccggccacatc
aactgtatccgcacccacagcacccatcccgacgatgaggacagcggtccttataagcac
atctctcccggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtcggccggctcactggtgcacatctcttacctggagatg
ggccacgacgtcactcgcctcttctactccaacattcagacagtcatcaacaactggctg
ctgatcgagggtcataccattggcattggggattccattgctgactccaagacctaccag
gacatccagaacactattaagaaggccaagcaagatgtgatagaggtcatcgagaaagct
cataacaacgagctggagcccaccccggggaacaccctgcggcagaccttcgagaaccag
gtgaaccgcattctcaacgacgcccgagacaagactggctcctctgcccagaagtccctg
tctgagtacaacaacttcaagtccatggtcgtgtctggggccaaaggttccaagatcaac
atctcccaggtcattgccgtcgtcggacagcagaacgtggaagggaaacggatcccattt
gggttcaagcacaggaccttgcctcacttcatcaaagacgactacgggcccgagagccgt
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccacgcc
atggggggtcgcgaggggctcatcgacacggctgtcaagactgccgagactgggtacatc
cagcggcggctcatcaagtccatggagtcggtgatggtgaagtacgatgccacggtgcgc
aactccatcaaccaggtggtgcagctgcgctatggcgaggacggcctggccggcgagagc
gtcgagttccagaacctggccaccctgaagccgtcgcacaaggctttcgagaagaagttc
cgcttcgactacacgaatgagagggcgctgcggcgcaccctgcaggaggacctggtgaag
gacgtgctgagcaacgcgcacatccagaacgagctggagcgggagttcgagcgcatgcgc
gaggaccgggaggtgctcagggtcatcttccccaccggcgacagtaaggtggtgctgccc
tgtaacctgctgcgcatgatctggaacgctcagaaaatcttccacatcaacccccgtctg
ccgtccgacctgcaccccatcaaggttgtagagggagtcaaggagttgagcaagaagctg
gtgatcgtgaacggggacgaccccctgagccggcaggcgcaggagaacgccacgctcctc
ttcaacatccacctgcgctccacgctctgctcccgccgcatggccgaggagtttcggctc
agcggggaggccttcgactggctgctcggggagatcgagtccaagttcaaccaagccatc
gcccatcctggggagatggtgggcgccctggctgcacagtcccttggagaacctgccacc
cagatgaccttgaacacctttcactatgccggcgtgtctgccaagaacgtcaccctgggt
gtgccccgtctcaaggagctcatcaacatctccaagaagccaaagacgccttcactaact
gtcttcctgctgggccagtccgctcgagacgctgagagggccaaggacattctgtgccgt
ctggagcatacgacactgaggaaggtgaccgccaacacagccatctactacgaccccaac
ccccagagcacagtggtggcagaggatcaggaatgggtgaatgtctactacgagatgcct
gactttgacgtggcccgcatctccccctggcttttgcgggtggagctggatcggaagcac
atgaccgaccggaagctgaccatggagcagattgccgagaagatcaacgcgggctttggc
gacgacttgaactgtatctttaacgacgacaacgccgagaagctggtgctgcgcatccgg
atcatgaacagcgacgagaacaagatgcaggaggaggaggaggtggtggacaagatggac
gacgacgttttcctgcgctgcatcgagtccaacatgctgaccgacatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacctgccgcagacagacaacaagaagaagatc
atcatcacagaggacggggagttcaaggccctgcaggagtggatcctggagacggacggc
gtgagcctgatgcgggtgctgagcgagaaggacgtggaccccgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcattgaagccgtgcggaaggctctggagcgg
gagctgtaccacgtcatctcctttgacggttcctacgtcaattaccgccacttggctctg
ctgtgtgacaccatgacctgtcgcggccacctgatggccatcacccgacatggggtcaac
cgccaggataccgggcctctcatgaaatgctcctttgaggaaacggtggacgtgctgatg
gaggccgccgcgcacggagaaagcgaccccatgaagggggtgtcggagaacatcatgctg
ggccagctcgcaccagccggcaccggctgcttcgacctcctgctcgacgccgagaagtgc
aagtacggcatggagatccccaccaacatccccggcttgggggccgccggacccactggc
atgttcttcggctcggcgcccagccccatgggagggatttctccggccatgacgccctgg
aaccagggcgcaaccccggcctatggcgcctggtcccccagtgtcgggagtggaatgacc
ccgggggcagccggcttctcccccagcgctgcctccgacgccagcggcttcagccccggc
tactcgcccgcctggtctcccacgccgggctccccgggctcacccggcccctccagcccg
tacatcccctcgccaggtggtgctatgtctcccagctactccccgacatcacctgcctat
gagcctcgctcccctggaggttatacgcctcagagtccctcttactcccccacctcacct
tcctactcccctacctctccatcctactctccaaccagtcccaactacagccccacatca
cctagctactccccgacctcgcccagctactccccaacctctcccagctactccccaacc
tctcccagctactccccaacctctcccagctactctccaacttccccgagctactctccc
acttctcccagctactctccgacctctcccagctactccccgacctctcccagctactcc
cccacctctcccagctactcgcccacctctcccagctactcgccgacgtccccaagctac
tctcccacctccccaagctactctcccacatccccaagctactcaccaacatccccaagc
tactcgccaaccagccctaactattctccaaccagtcccaattacaccccgacatctccc
agctatagtccgacgtcaccgagctactccccgactagtcccaactacacgcccacgagc
cctaactacagcccaacctctccaagttactctccaacttcacccagctactccccaacc
tcgccgagctattccccgtcaagcccacgatacacaccacagtctccgacctatacccca
agctcccccagctacagccccagctcccccagctacagccccacctcaccgaagtacacc
cccaccagcccctcgtacagccccagctccccagagtacaccccgacctctcccaagtac
tcacctaccagcccgaagtactcacccacctcccccaagtactcacccaccagccctacc
tactcgcccaccaccccaaagtactccccaacatctcctacttactcgccgacctctccg
gtctataccccgacctcgcccaagtactcgcccaccagccccacctactcacccacctcc
cccaagtactcacccaccagccccacctactcacctacctcccccaaaggctctacctac
tcacccacttccccgggctactcgcccaccagccccacctacagcctcaccagtccggcc
atcagcccggacgacagcgatgaggagaactga
DBGET
integrated database retrieval system
