Escherichia coli O44 H18 042 (EAEC): EC042_4354
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Entry
EC042_4354 CDS
T02067
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Pathway
elo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EC042_4354 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
elo03021
]
EC042_4354 (rpoB)
03400 DNA repair and recombination proteins [BR:
elo03400
]
EC042_4354 (rpoB)
Enzymes [BR:
elo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EC042_4354 (rpoB)
Transcription machinery [BR:
elo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EC042_4354 (rpoB)
DNA repair and recombination proteins [BR:
elo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EC042_4354 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
CBG37178
UniProt:
D3GSW6
LinkDB
All DBs
Position
4655517..4659545
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaaatttatcgag
caagatcctgaagggcagtatggtctggaagctgctttccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgtccaggaatgtcaaatccgtggcgtgacctattccgcaccgctgcgcgttaaactg
cgtctggtgatctatgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgacagacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttcccagctgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtatcatcccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtattgaccgt
cgccgtaaactgcctgcgaccatcattctgcgtgccctgaactacaccacagagcagatc
ctcgacctgttctttgaaaaagttatctttgaaatccgtgataacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcatctttcgacatcgaagctaacggtaaa
gtgtacgtagaaaaaggccgccgtatcactgcgcgccacattcgccagctggaaaaagac
gacgtcaaactgatcgaagtcccggttgagtacatcgcaggtaaagtggttgctaaagac
tatattgatgagtctaccggcgagctgatctgtgctgcgaacatggagctgagcctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcccatatatctctgaaaccttacgtgtcgacccaactaacgaccgtctg
agcgcactggtagaaatctaccgcatgatgcgtcctggcgagccgccgactcgtgaagca
gctgaaagcctgttcgagaacctgttcttctccgaagaccgttatgacttgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgaagaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgttatgaaaaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgttggtgaaatggcg
gaaaaccagttccgtgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgca
gcagtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgt
gaacgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacccctgaaggtccgaacatcggtctgatcaactctctgtccgtgtacgcacag
actaacgaatacggcttccttgagactccgtatcgtaaagtgaccgacggtgttgtaact
gacgaaattcactacctgtctgctatcgaagaaggcaactacgttatcgcccaggcgaac
tccaacctggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttccttgaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgcgctgataagccgctggtt
ggtacgggtatggaacgtgctgttgccgttgactccggtgtaactgcggttgctaaacgt
ggtggtgtcgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggtgaagcaggtatcgacatctacaacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgtctctgggtgaaccggtagaacgaggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgcttggtcagaacatg
cgcgtagcgttcatgccgtggaatggttacaacttcgaagactccatcctcgtatccgag
cgtgttgttcaggaagaccgtttcaccaccatccacattcaggaactggcgtgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacattccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggtgcggaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaactcaactgaccccagaagaaaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggtgtatccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaaacaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagcgggtctgttcagccgtatccgtgctgtgctggta
gccggtggcgttgaagctgagaagctcgacaaactgccgcgcgatcgctggctggagctg
ggcctgaccgacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtatatctggcggttaaacgccgtatc
cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgtaatttctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctcgaaacccacctgggtatggct
gcgaaaggtatcggcgacaagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgaattcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagttgac
ctgagtaccttcagcgatgaagaagttatgcgtctggctgaaaacctgcgcaaaggtatg
ccaatcgcaacgccggtgttcgacggtgcgaaagaagcagaaattaaagagctgctgaaa
cttggcgacctgccgacttctggtcagatccgcctgtacgacggtcgcactggtgaacag
ttcgaacgtccggtaaccgttggttacatgtacatgctgaaactgaaccacctggtcgac
gacaagatgcacgcgcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgtttcggggagatggaagtgtgggcgctggaagca
tacggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtactaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca
gaatccttcaacgtattgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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integrated database retrieval system
