Esox lucius (northern pike): 105007985
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Entry
105007985 CDS
T04894
Symbol
col9a1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105007985 (col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105007985 (col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105007985 (col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
els00535
]
105007985 (col9a1)
Proteoglycans [BR:
els00535
]
Extracellular matrix (ECM) proteoglycans
Others
105007985 (col9a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105007985
NCBI-ProteinID:
XP_010865452
UniProt:
A0A3P8Y951
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Position
LG05:complement(6841678..6860646)
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AA seq
676 aa
AA seq
DB search
MARGPFLWVLLLQLVLICSAQRSLGPTGPPGPAGVPGIDGVAGERGDDGEDGPAGPDGDA
GKPGSSGLPGLPGADGLTGPAGDEGPDGPIGQKGEPGKPGPRGLAGVGEDGPPGPPGPGG
LPGELGEVGPAGSIGVRGPTGPRGPVGPRGAAGMQDLSAELCSNSCPPGTPGHPGLPGMK
GHKGVKGESGEPGKQGHKGEEGDQGPTGDRGSQGPTGPQGIRGSTGMMGPKGELGPRGHD
GDPGSQGAAGATGDQGQRGIMGEQGPKGDEGPQGGRGITGLPGPKGEGGLPGVDGREGIP
GMPGAKGAIGKAGSAGEVGLQGLPGLPGSPGPKGTGGEKGSSGDPGLIGTMGSAGKTGER
GEAGELGPTGPIGGPGDSGEAGPVGPPGKPGPRGSKGDLGLPGLPGPPGLPGVKGERGEA
GDIGPKGDQGEQGSEGNSGDKGDVGDPGEAGPKGATGNPGELGNRGPEGSRGQPGIEGPA
GSPGPRGMQGNRGATGIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAA
GLPGKPGRPGPPGPPGDSGFPGQAGARGLPGLKGPPGLLGLKGPKGEMGDRGDRGPTVRG
PKGQPGPPGLPGEPGKPGYGQEGRDGERGPPGVPGQPGVPGPPGNAGPNGYCDPSSCNLR
PGAVDTSIKGPEGTRN
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgggccatttctttgggtgcttttgctacagcttgtcctcatttgctccgca
caaaggagccttggacccactggccctccaggacctgccggtgtcccgggaattgatggc
gtggctggtgaaagaggagacgacggagaggatggccctgctggtccggacggagacgct
ggtaaaccaggatcgtctgggttgccaggtctgcctggggctgatgggttgacaggcccg
gctggagacgaaggtcctgacggtcccattggacagaaaggtgaacctgggaaacctgga
cctcgtggattagccggtgttggagaagatggaccccctggaccccctgggccaggagga
cttcccggtgaattgggcgaagttggaccggctggctccataggagtgagaggaccgact
ggacctcgtggccctgtagggcccagaggtgcagcaggaatgcaggatctgagtgcagag
ttgtgctctaattcctgcccacctgggacacctggtcatcctggcctccccggcatgaaa
ggtcacaaaggtgtcaaaggggaatcgggagagccagggaaacaaggccacaagggtgag
gagggtgatcaggggccgacaggagaccgtggttcccagggcccgacgggtcctcaggga
atcagagggtccactgggatgatggggcccaaaggtgaactgggaccacgaggacacgat
ggagatccaggttcccagggagctgcgggggccactggtgaccaaggccagagaggcata
atgggtgaacaaggtccgaagggtgatgagggacctcaaggtggaagaggaatcacaggt
ctacctgggcctaagggagagggcggtttgccaggtgtggatggtcgcgagggtattcct
ggaatgccgggagccaagggtgccattggcaaggctgggtctgcgggagaggtggggctt
caggggcttcctggattacctggttcacctgggccaaaaggaactggtggtgagaagggt
agctctggagatccaggtcttattggaacaatgggatctgctggtaaaacaggagagaga
ggagaggcaggggaactcgggcccactggacccattggtggaccaggagacagtggagaa
gctggaccagtgggtccccctggcaaaccaggacccaggggatctaaaggggatcttggt
cttcctggtcttcctggacccccaggtctcccaggagtaaagggagagaggggagaagct
ggcgacataggacctaagggagatcagggagaacaaggttctgagggaaactctggagac
aagggagacgttggtgatcctggagaagctggacccaaaggagcaactggaaacccggga
gagcttggaaacagaggaccggagggcagcaggggacagcctggcatcgaaggtccggct
ggctcccccggaccgcggggcatgcaaggaaacaggggtgcaaccgggattaggggttcc
caggggccagcgggtaaagaaccaagcgatcaacacatccgacaagtctgcatgagagtt
atgcaagagcagctggcccagttggccgccagtttaaggaggccagagtccggagccgcg
ggacttcctggcaagcctggtcgtcccggtccgcctggccctccaggggacagtggcttc
cctgggcaggccggagcaaggggacttcctggcctcaaaggacctcctgggctactggga
ctcaaaggacccaaaggtgaaatgggcgatagaggagacagaggtcccacagtgcgtggg
cctaagggtcagccgggaccacctggtctgccaggggagccagggaagcctggttatggc
caggaggggcgtgacggggagaggggacctccaggcgttcctggccagcctggggtacct
gggcctcctggcaatgcgggcccgaatggctactgtgacccctcatcctgcaacctgaga
ccgggggccgtggacaccagcatcaagggcccagagggaacaagaaactag
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