Esox lucius (northern pike): 105018219
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Entry
105018219 CDS
T04894
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
els
Esox lucius (northern pike)
Pathway
els03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105018219 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105018219 (cnot1)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105018219 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105018219 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105018219
NCBI-ProteinID:
XP_010881770
LinkDB
All DBs
Position
LG19:complement(8966332..8991685)
Genome browser
AA seq
2430 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGVNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTRMESSLAEFMQEVGYGFCASLDECRNIILQYGAREVTASQVARVLGMMART
HSGLCDGIALQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFMIRDSKGLQMVVYGIQRGLGMEGFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKALPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQS
CAGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLTLSSSAPSHTQNMPGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIG
SLSSQLGNPGSLGSGIGSGLSSGLGMPAVSSDPFGTRKMNTPGLNPPTFQQSKMKASDLS
QVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNC
MLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKM
YYFGIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQA
SITTPGSLALAQAQAQSQSPKAPQPGQASTLVTTATTTTTVAKTTTITRPTPGTFKKDVP
PSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFM
PWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFS
DRSLLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSL
RSVIFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKE
KLKNLEEQLSAPKKEAKPPEEMLPIVSTGIQHFHSGMPLVGDFLPFAAAPSTPAVTTTCT
ATGPPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPV
VDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATN
LKNSFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFE
LRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDL
SQPTGFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVA
LARNSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCN
KQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVK
LLLVDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGG
PNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQG
ILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLV
KHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHV
LETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQL
LIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQ
LRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTR
SPVTFLSELRSNLQVGGTTLGPWKYLQHSDTALDQVSNEPGNRYNIQLINALVLYVGTQA
IAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC
TMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCA
PEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7293 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatttattacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttctacactctgctacgcgatagataatcctttgcat
taccagaagagtttgaagccgtcaacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagtgatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaaactccccgacctcctccgctcttac
gtggacgcagaccttggagtcaaccaggaaggtggcttccaagacattgccatagaggtc
ctgcacctgctcctctcccatcttctgtttggccagaagggagccagcggggtcggtcaa
gagcagattgacgcgttcctcaagacactgtgcagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgagaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccaggatggagagttctcttgcggaattcatgcag
gaagtgggctatggtttttgtgcaagtctcgatgaatgccgcaacataatcctgcagtat
ggggcacgagaggttacagccagccaggtggccagggtcctggggatgatggctcgcact
cactctggcttgtgtgatggaattgccttacagtctatctcagctccaggcagtggcatt
tggagtgatggaaaggacaaaagtgatggttctcaggcccacacctggaatgtagaagtt
ctgattgacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctatgag
ctcgatcacccaggcttcatgatccgggacagtaagggacttcagatggtcgtttatggg
atccagaggggtctgggcatggaagggtttcctgttgacctcatctaccgaccctggaag
catgctgaagggcagctgtccttcatccagcactccctcatgagccctgatgtcttctgc
tttgctgactacccctgtcacactgtagccatcgacatactgaaggccctaccggaggat
gacaaccgggagatcgccacctggaagagcctagacctagtagagagcctcctacgtctc
tctgaggtgggccagtatgagcaggtgaagcagctcttcagctttcccatcaagcactgc
cccgacatgctggtgctggcacttctgcagatcagcacctcctggcacaccctgcgccac
gagctcatctccaccctcatgcccatcttcctgggcaaccatccaaactctgccatcatc
ttgcactacgcgtggcatggacagggccagtccccctcgatccgtcagctgatcatgcac
tcgatggcagagtggtacatgcgaggggagcagtatgaccaggccaagctgtcccgcatc
ctcgacgtggcccaggacttgaagtctctatcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgcgagcacggggtgagtggcgagccgtttatccaggcatgtgta
acgttcctgaagagacgctgtccctccattatgggtggtctggccccagagaaggaccag
cccaaaagtgcccagctccccccagaaacaatggctaccatgctgggttgtctgcagtct
tgtgcagggagtgtctctcaagagctctcggagacaatcttgactatggttgccaattgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggaagagct
ccaagcaccagcagcctagatgccatttccccagtgcaggtatcggtgtctcctctccag
atggatcccctgacagccatgggctccctgaccctaagcagctccgccccctctcacaca
cagaacatgccgggcttccccaccccgctgggttcagccttcagcaacccccagtcccca
gctaaggcctttcctccactgtccaaccccaaccccagcacgccatttgggggaattgga
agcctgtcttctcagctgggtaacccaggttcactgggttctggcattggttctggtctt
agttctggtcttggaatgccagcggtaagcagtgatccttttggaacaaggaagatgaac
acgcctggtctaaatccacccacctttcagcagagtaagatgaaggcctctgacctatct
caggtgtggcctgaggctaaccagcactttagtaaggagattgacgatgaagctaacagc
tacttccagcgtatctacaaccacccaccacaccctaccatgtctgttgatgaggtgctg
gagatgttgcaaaggttcaaggactccaccatcaagcgagagcgagaggtctttaactgc
atgctaaggaacttgttcgaagaataccgcttcttcccccagtaccctgacaaggagctg
cacatcaccgcctgtctgtttgggggcatcattgagaagggccttgtaacctacatggcc
cttggactggccctcagatatgtccttgaagccttaaggaaaccatttgggtccaaaatg
tattactttggaatcgctgctctagatagattcaaaaataggctgaaggattacccccaa
tattgccagcacttggcctcaattggccactttctgcaattcccccatcatttacaagag
tgcgtgcagtatatcgagtatggccaacagtcacgtgaccctccggtgaagatgcaggca
tccatcacaaccccgggaagcctggcattggctcaggctcaggcccagtcacagtctccc
aaagccccccagcctggacaggccagcaccctggtaaccacagctactaccaccaccacc
gtcgccaaaaccactaccatcacccggcctacccctggcaccttcaagaaggatgtgccg
ccctcaatcaacaccacaaacattgatactctactagtagcaacagaccaaacggagagg
attgtggaacctccggagaatgttcaagaaaaaattgccttcattttcaataatctgtca
caatccaacatgacacagaaggttgaggagttaaaggagactgtgaaggaggagttcatg
ccctgggtctcccagtatctggttatgaagagggtcagtatcgagcccaattttcacagc
ctatactcaaacttcctggacacgctgaagaacccggagtttgtcaaaatggtcctgaat
gaaacataccgaaacatcaaggtacttcttacttcggataaggcagctgcaaacttctct
gaccgatccctcctgaaaaatttgggccactggcttggaatgatcacactggccaaaaac
aagcccatcctttacacagatttggaggtcaaatctctcttgttggaagcgtatgtcaag
gggcagcaggagctgctgtatgttgtcccgtttgtggctaaagtcctggagtccagttta
cgcagcgtgatctttcggccccagaatccttggactatggcaatcatgaacgttctagcg
gagctgcatacagagcatgacctaaagctgaacttaaaatttgagattgaggtactgtgc
aagaacctgtcactggacatcaatgacctgaagcctggcaacctgctgaaggataaagag
aagctgaagaacctggaggagcagctctcagcaccaaagaaggaagccaagcctcctgaa
gaaatgctccctattgtcagcacaggtatccagcactttcactctgggatgcctctggtt
ggagactttcttccatttgcagctgcaccctccactcctgctgtcaccaccacctgtaca
gccaccgggccccctactcctcagttcagctatcatgacatcaacgtgtatgcgcttgca
ggcctggccccccacatcaatatcaacatcaacatccccttgctccaagcccacccccag
ctaaagcagtgtgtgaggcagtccatcgagcgtgccgtgcaggagctcgtccaccctgtg
gttgaccgttccatcaagatcgccatgaccacctgtgagcagatcgtgaggaaggacttt
gccctggactcggaggagtcgcgcatgcgggtggcagcccatcacatgatgcggaacctg
accgctggcatggccatgatcacctgccgggagcccctgctcatgagcatcgccaccaac
ctgaagaacagctttgccgcagccctcagggctccaaccccccagcagagagagatgatg
gaggaggctgctgcccgggtagctcaggacaactgtgaactggcctgctgcttcatccag
aagactgctgtggagaaggcagggccagagatggacaagaggctggccacggagtttgag
ctgaggaagcatgcccgccaggaaggccgccgctactgtgacccggtggtgctgacctac
caggctgagcgcatgcccgagcagatcaggcttaaggttggaggtgtagaccccaaacag
ctggcagtctatgaggagtttgctaggaatgtgcctggtttcctacccagcaatgacctt
tctcagcccactgggttccttgcccagcccatgaagcaacaggcttgggctacagatgat
gtggctcagatctatgacaagtgcatggcagacctggaacagcacctccatgccatcccc
ccggcactggccatgaaccctcaaacccaggccttacgtagcctcctggaggctgtggct
ctggccaggaactcccgggacggcatcgctgctctgggcttgctgcaaaaggctgtcgag
ggtctgctggatgcaaccagtggtgccgatgctgacctgctgctgcgctacagagagtgc
cacttgctggtgctcaaagctctccaggatggccgggcgtacggaccacagtggtgcaac
aagcagattaccaggtgcctgattgagtgccgggatgagtacaagtacaatgtggaggct
gtggagctgctgatcagaaaccacctggtcaacatgcagcagtatgacctgcacctggca
cagtctatggagaatgggctccactacatggctgtggccttcgccatgcagctggtgaag
ttgttgctggtggatgagcgcagtgtgagccacatcactgaggctgacctgttccacacc
atcgagactctgatgagaaccagtgcccactccagggccaacgcccctgaagggcttcct
cagctgatggatgttgtccgctccaactacgaggccatgattgaccgggcccacggaggt
cctaacttcatgatgcactctggcatctcccaggcttctgagtatgacgatccaccaggc
ctgagagagaaggctgagtacctgctgagggaatgggtgaacctgtaccattctgcagct
gccggtcgggacagtaccaaggccttctctgcctttgtgggccagatgcaccagcaaggc
attctgaagactgatgacttgatcacacgtttcttcaggctgtgcacagagatgtgtgtg
gagatcagctaccgtgcccaggcagagcagcagcacaacccagcagccagcgctgctatc
atccgggccaagtgctaccacaatcttgacgcctttgtgcgcctcattgccctgctggtc
aagcactctggagaagctaccaacacagtcaccaagatcaacctacttaacaaggttcta
ggtattgtggttggagtgctgatccaagaccatgatgtgagacagactgagttccagcag
ctgccttaccaccgcatcttcatcatgttgctgctggagctcaatgcccctgagcatgtg
ctggagaccatcaacttccagacactcactgccttctgcaacactttccacatcctgagg
cctaccaaagccccgggctttgtctacgcttggctggagttgatctctcatcgtatcttc
atcgccaggatgctggcgcacacccctcagcagaagggttggcccatgtatgctcagctg
ctcattgacctgttcaagtacctggctcccttcctgaggaatgttgagctcaacaaacct
atgcaaatcctctacaaggggaccctgcgtgtccttctggtcctgctgcatgacttcccg
gagttcctgtgtgactatcactacggcttctgtgatgtcatcccgccgaactgcatccag
ctccgcaacctgatcctgagtgccttcccacgcaacatgaggcttccagaccccttcact
cccaatctgaaggttgacatgctgagcgagataaatatcgctccacgtatcctcactaac
ttcactggagtaatgccctctcagttcaagaaggatttggactcatacctgaagacacgc
tcccccgtcaccttcctgtctgagctccgcagcaacctgcaggtagggggcaccactctg
ggtccctggaagtatttgcagcacagcgacacagctttagaccaggtctcaaacgagcca
ggcaaccgctacaatatccagctgattaacgccctggtgctgtacgtggggactcaggcc
atcgcacacatccacaacaagggcagcaccccctccatgagcaccatcactcactcagcc
cacatggacatcttccagaacctagcggtggacctggatactgaggggcgctatctcttc
ctgaatgccatcgccaaccagcttcgctatccaaacagccacactcattacttcagctgc
actatgctctacctgtttgctgaggccaacacagaggcaatccaggagcagatcacccgg
gttctcctggagaggctgatagtgaaccggcctcacccatggggactgctcatcaccttc
attgagctcatcaagaaccctgccttcaagttctggagccacgactttgtgcattgtgcc
ccagagattgaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggct
cagcaggtgatggaaggcactggtgccagttag
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integrated database retrieval system
