Epinephelus lanceolatus (giant grouper): 117255435
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Entry
117255435 CDS
T07331
Symbol
col9a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ely
Epinephelus lanceolatus (giant grouper)
Pathway
ely04510
Focal adhesion
ely04512
ECM-receptor interaction
ely04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ely00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117255435 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117255435 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117255435 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ely00535
]
117255435 (col9a1a)
Proteoglycans [BR:
ely00535
]
Extracellular matrix (ECM) proteoglycans
Others
117255435 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117255435
NCBI-ProteinID:
XP_033480239
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All DBs
Position
6:4809557..4841406
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AA seq
687 aa
AA seq
DB search
MALSRIYRESLLVILLQIVLICSAQRGPVGPRGPQGPPGAAGVPGVDGIDGDRGEDSKVD
GGPGLDGDNGKDGAPGAAGLPGADGPVGPPGDPGPVGPKGPKGDPGPRGPAGEPGVGPDG
LDGIPGTDGLPGELGKVGPPGARGKRGPVGLPGAAGPRGPPGVYQGEDLCPNACPSGLSG
HAGLPGMKGHKGVKGESGEPGRQGHKGEEGEQGLQGEVGAQGLPGPGGPRGLPGIIGSKG
DRGPRGKPGDAGPQGIQGGPGDSGQRGAIGEPGPAGVQGDRGPPGIRGVPGPKGEPGLPG
PDGREGIPGLPGSKGLTGKSGAPGDAGPQGLPGLPGAYGXKGVSGAVGNPGDPGVVGMMG
SSGKQGERGEQGEVGPPGPRGGPGARGEKGPDGPSGLPGARGAKGDPGLPGLPGPAGYRG
QKGDRGAVGLDGPKGDQGPPGAEGTPGEGGDVGDPGEPGEKGSTGPPGETGNKGPEGSRG
QHGKEGKEGQPGPRGMQGDMGVPGLPGSQGPAGKSPTDTHIKQVCMRVMQEQLAQLAASL
SRPESGISGLPGPPGPPGPPGPAGENGFPGHTGSRGLPGLKGPAGLMGRKGLKGDQGDKG
DRGPTTRGPKGAPGAPGLTGEPGRPAYGKDGRDGERGPRGVPGVTGVPGPPGHPGMNGYC
ESSQCILPMVASPVSAKDSNMKGPSDM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctctctccaggatctatcgagagtctttgctggtgattttactgcaaattgtgctg
atttgctcggctcagaggggcccggtcggtcccagagggccccaggggccgccaggagca
gccggcgttcccggagtggacggcattgatggcgacagaggagaagactccaaggtggac
ggcggaccaggtcttgacggtgataacggcaaagacggagctccaggagctgcaggcctt
ccaggagcagatggacctgttggacctcctggagatccaggtccagtgggcccaaaagga
ccaaaaggagatcctggaccacgtgggcctgccggtgagcccggtgtaggacctgatggg
ctggatggtattccaggtacagacgggctaccaggcgaactgggcaaagttggaccacct
ggagcgagaggcaagagaggtccggttggtcttcctggtgctgctgggccacggggtcct
ccaggagtgtatcaaggcgaggacctgtgtcccaacgcctgcccttctggtctgtctgga
catgctggtctccccggcatgaaaggccacaaaggggttaaaggtgaatctggtgagcct
ggaagacaaggacacaagggagaggagggcgaacaaggacttcagggggaagttggagct
caaggactaccaggcccaggtggaccaagaggcctcccaggaataattggctccaaaggt
gacaggggacctcggggaaaaccaggtgatgcaggtcctcagggaatccaggggggccca
ggtgattcaggtcagagaggagccataggtgaacccgggccagcaggagtgcagggtgat
cgaggtccacctggaatcagaggagtgccagggccaaaaggagagcctggtctccctggt
ccagatggccgtgagggaatacccgggctgccagggtccaagggtcttacagggaaaagt
ggggctccaggtgatgctggcccacaaggacttcctggcttgccaggtgcttatggctaa
aaaggagtcagcggtgcagtgggtaacccaggtgatccaggtgttgtaggaatgatgggg
tcttcagggaaacaaggcgagcgtggcgagcagggagaggtgggacctcctggaccaaga
ggcggaccaggtgcacgaggagagaaagggcctgacgggccttcagggttaccaggagct
aggggagctaaaggggacccaggccttcctggacttcctggtcctgctggttatcgtggg
cagaagggcgacaggggtgcagtcggtctcgatggtccaaagggagaccagggacctcca
ggtgctgaaggaacaccaggagagggcggagatgtgggtgatccaggagaaccaggagag
aaaggatcgacaggcccaccaggagagacagggaataaaggacctgagggcagccgagga
caacacgggaaagagggcaaggagggccaaccgggacctcgtggcatgcagggcgacatg
ggggtaccaggcctgccgggatctcagggaccagcgggaaaatcaccaacagatacacac
atcaaacaagtctgcatgagggtaatgcaagagcagctggcccagctagcagctagcctg
agcaggcctgagtcaggcatctctgggctgcctggtccccctggcccacctggacctcca
ggccccgccggagagaatgggttccccggacacaccggatcacgaggactgcccggtctg
aagggtccagctgggcttatgggtcgcaaaggactgaaaggtgaccagggtgacaaaggg
gacagaggacccacaacgagaggacccaaaggagcgccaggtgcccccggtctaacaggt
gaacctggtcgaccggcttacggcaaagacggtcgtgacggtgagaggggaccccgtggt
gttcccggtgtgaccggtgttcccgggcctcctggtcatcctggtatgaacggttactgt
gagtcgtcgcagtgcatcctgcccatggtggcgtcgccggtttctgcaaaggactcgaac
atgaagggccccagtgacatgtga
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