KEGG   Escherichia marmotae: C1192_18215
Entry
C1192_18215       CDS       T05353                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ema  Escherichia marmotae
Pathway
ema03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ema00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C1192_18215 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ema03021]
    C1192_18215 (rpoC)
   03400 DNA repair and recombination proteins [BR:ema03400]
    C1192_18215 (rpoC)
Enzymes [BR:ema01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C1192_18215 (rpoC)
Transcription machinery [BR:ema03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C1192_18215 (rpoC)
DNA repair and recombination proteins [BR:ema03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C1192_18215 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AUT28831
LinkDB
Position
3540687..3544910
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggcgtcatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatttggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgtgatatcgaacgcgtactgtac
ttcgaatcctatgttgttatcgaaggcggtatgaccaacctggaacgtcaacagatcctg
actgaagaacagtatctggatgcgctggaagagttcggtgatgaattcgacgcgaagatg
ggtgcggaagctattcaggcactgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaaactgaccaagcgt
atcaaactgctggaagcattcgttcagtctggtaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggcagcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccatcaaagctgctaagaaaatg
gttgaacgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccgactctgcaccgtctgggtatccaggcatttgagccggta
ctgatcgaaggtaaagctatccagctacacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtgctgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgagtatgaaaaagatgctaac
ggtgaattagtcgcgaaaaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgattgtaccgaaaggtctgccttactccatcgtcaaccaagcgctgggtaaaaaagca
atctccaaaatgctgaacacctgctaccgcattctcggtctgaaaccgaccgttattttt
gcggaccagatcatgtacaccggctttgcatatgcagcgcgttccggtgcatctgttggt
atcgatgacatggtcatcccggagaagaaacacgaaatcatctccgaggcagaagcagaa
gttgctgaaattcaggagcagttccagtctggtctggtaactgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaactgaaaccgttattaaccgtgacggtcaggaagagaagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtcgcgcaggacctggtggttaccgaagatgattgtggtactcatgaaggtatc
atgatgaccccagttatcgagggtggcgacgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtaactgctgaagacgttctgaagccgggtactgctgacatcctcgttccgcgc
aacacactgctgcacgaacagtggtgtgacctgctggaagagaactctgtcgacgcggtt
aaagttcgttctgttgtatcttgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaataaaggtgaagctatcggtgttatcgcggca
cagtccatcggtgaaccgggtacacagttgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaaactc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaaactgatcgacgaatttggtcgtaccaaagaaagctacaaagtgccttacggt
gcggtactggcgaaaggcgatggcgaacaggttgctggcggcgaaaccgttgcaaactgg
gatccgcacaccatgccagttatcactgaagtaagcggttttgttcgctttactgacatg
atcgacggccagaccattactcgtcagaccgacgaattgaccggtctgtcttcgctggtt
gttctggattctgcagagcgtaccgcaggtggtaaagatctgcgtccggcactgaaaatc
gttgatgctcagggtaatgacgttctgatcccaggtactgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcaactggaagatggcgtacagatcagctctggtgacact
ctggcgcgtattccgcaggaatctggcggtactaaagacatcaccggtggtctgccgcgc
gttgcagacctgtttgaagctcgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtgtcgtttccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcaccccggta
gacggcagcgaaccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgttatttccgacggtccggaagcaccgcacgacatt
ctgcgtctgcgtggtgttcatgctgttactcgttacatcgttaacgaagtacaggacgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgttaacgcaggtagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgcaaaccgcgaactggaagcgaacggcaaagtgggggca
acttactcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatcgttccaggaaactacacgtgtcctgaccgaagccgctgttgcaggtaaa
cgtgatgaactgcgcggtctgaaagagaacgttatcgttggtcgtctgatcccagccggt
acgggttatgcgtatcaccaggatcgtatgcgccgccgtgccgcaggtgaggctccggct
gcaccgcaggtgactgcagaagacgcatctgccagcctggcagaactgctgaacgcaggt
ctgggtggttctgacaacgagtaa

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