Escherichia marmotae: C1192_18215
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Entry
C1192_18215 CDS
T05353
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ema
Escherichia marmotae
Pathway
ema03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1192_18215 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ema03021
]
C1192_18215 (rpoC)
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_18215 (rpoC)
Enzymes [BR:
ema01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1192_18215 (rpoC)
Transcription machinery [BR:
ema03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1192_18215 (rpoC)
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1192_18215 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AUT28831
LinkDB
All DBs
Position
3540687..3544910
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggcgtcatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatttggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgtgatatcgaacgcgtactgtac
ttcgaatcctatgttgttatcgaaggcggtatgaccaacctggaacgtcaacagatcctg
actgaagaacagtatctggatgcgctggaagagttcggtgatgaattcgacgcgaagatg
ggtgcggaagctattcaggcactgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaaactgaccaagcgt
atcaaactgctggaagcattcgttcagtctggtaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggcagcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccatcaaagctgctaagaaaatg
gttgaacgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccgactctgcaccgtctgggtatccaggcatttgagccggta
ctgatcgaaggtaaagctatccagctacacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtgctgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgagtatgaaaaagatgctaac
ggtgaattagtcgcgaaaaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgattgtaccgaaaggtctgccttactccatcgtcaaccaagcgctgggtaaaaaagca
atctccaaaatgctgaacacctgctaccgcattctcggtctgaaaccgaccgttattttt
gcggaccagatcatgtacaccggctttgcatatgcagcgcgttccggtgcatctgttggt
atcgatgacatggtcatcccggagaagaaacacgaaatcatctccgaggcagaagcagaa
gttgctgaaattcaggagcagttccagtctggtctggtaactgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaactgaaaccgttattaaccgtgacggtcaggaagagaagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctt
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtcgcgcaggacctggtggttaccgaagatgattgtggtactcatgaaggtatc
atgatgaccccagttatcgagggtggcgacgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtaactgctgaagacgttctgaagccgggtactgctgacatcctcgttccgcgc
aacacactgctgcacgaacagtggtgtgacctgctggaagagaactctgtcgacgcggtt
aaagttcgttctgttgtatcttgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaataaaggtgaagctatcggtgttatcgcggca
cagtccatcggtgaaccgggtacacagttgaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaaactc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaaactgatcgacgaatttggtcgtaccaaagaaagctacaaagtgccttacggt
gcggtactggcgaaaggcgatggcgaacaggttgctggcggcgaaaccgttgcaaactgg
gatccgcacaccatgccagttatcactgaagtaagcggttttgttcgctttactgacatg
atcgacggccagaccattactcgtcagaccgacgaattgaccggtctgtcttcgctggtt
gttctggattctgcagagcgtaccgcaggtggtaaagatctgcgtccggcactgaaaatc
gttgatgctcagggtaatgacgttctgatcccaggtactgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcaactggaagatggcgtacagatcagctctggtgacact
ctggcgcgtattccgcaggaatctggcggtactaaagacatcaccggtggtctgccgcgc
gttgcagacctgtttgaagctcgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtgtcgtttccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcaccccggta
gacggcagcgaaccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgttatttccgacggtccggaagcaccgcacgacatt
ctgcgtctgcgtggtgttcatgctgttactcgttacatcgttaacgaagtacaggacgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgttaacgcaggtagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgcaaaccgcgaactggaagcgaacggcaaagtgggggca
acttactcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatcgttccaggaaactacacgtgtcctgaccgaagccgctgttgcaggtaaa
cgtgatgaactgcgcggtctgaaagagaacgttatcgttggtcgtctgatcccagccggt
acgggttatgcgtatcaccaggatcgtatgcgccgccgtgccgcaggtgaggctccggct
gcaccgcaggtgactgcagaagacgcatctgccagcctggcagaactgctgaacgcaggt
ctgggtggttctgacaacgagtaa
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