Eleginops maclovinus (Patagonian blennie): 134870754
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Entry
134870754 CDS
T09869
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
KO
K06236
collagen type I alpha
Organism
emac
Eleginops maclovinus (Patagonian blennie)
Pathway
emac04510
Focal adhesion
emac04512
ECM-receptor interaction
emac04518
Integrin signaling
emac04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
emac00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134870754 (col1a1b)
04518 Integrin signaling
134870754 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134870754 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134870754 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
emac00536
]
134870754 (col1a1b)
Glycosaminoglycan binding proteins [BR:
emac00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134870754 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
134870754
NCBI-ProteinID:
XP_063749211
LinkDB
All DBs
Position
10:complement(13706923..13724841)
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AA seq
1446 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDSSFGSCTLEGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCTDPIIPDGECCPICPDETEDTSTPQPGNQGPKGDEGPVGPPGNDGL
DGQPGVPGPPGPPGPPGLGGNLRPQMSYVDHSKSSGPPVPGPMGPMGPRGPSGSPGSSGP
QGFNGPPGEPGEPGASGAMGPRGPAGPLGKNGDDGEPGKAGRPGERGAAGPQGARGFPGT
AGLPGIKGHRGFSGLDGAKGDGGPAGPKGESGSAGENGIPGAMGARGLPGERGRPGAPGP
SGARGNDGNTGAAGPPGPTGPAGSPGFPGGAGAKGETGPAGGRGNEGPQGARGEAGNPGP
SGPAGAAGAPGSDGSAGGKGSPGAAGIAGAPGFPGARGPAGSQGAVGAPGPKGNNGDHGP
TGSKGEPGVKGEPGPAGVQGLPGASGEEGKRGGRGEPGGAGARGPNGERGAPGARGFPGA
DGGAGGKGGPGERGANGPAGPQGATGESGIPGGAGAPGPKGMTGSPGTPGPDGKAGPAGS
PGQDGRTGPAGATGSRGQPGVMGFPGPKGVAGENGKPGERGPTGATGALGAPGKDGDVGA
PGPSGVAGPAGEKGEGGPAGPSGFQGLPGPQGATGETGKPGEQGGPGEAGPSGPSGPRGD
RGFPGERGAPGGAGPTGSRGAPGPAGNDGAKGEPGAGGAPGGMGSPGMQGMPGERGSSGL
PGAKGERGDAGAKGGDGSAGKDGMRGMTGAIGVPGPHGAQGEKGEPGAVGVAGPTGPRGA
PGERGETGPSGPAGFAGPPGADGQPGAKGESGDSGPKGDGGAPGPAGPVGGAGPQGPSGP
TGPKGARGGAGPPGATGFPGPAGRVGPPGPSGASGPPGPMGPLGKDGARGGRGETGPAGR
PGEAGATGPQGLSGEKGSVGSDGAPGPSGIPGPQGVVGQRGIVGLPGQRGERGFSGLPGT
SGEPGKQGPAGLHGERGPPGPAGPPGLTGPTGEAGREGSAGHDGAPGRDGAAGPKGDRGE
SGMSGPPGPPGAPGAPGAVGPSGKSGDRGESGAAGSPGPAGPAGVRGPAGPAGAKGDRGE
AGEAGDRGHKGHRGFTGMQGLPGTSGGSGERGPAGASGPAGPRGPSGSNGSPGKDGMNGL
PGPIGPPGPRGRNGEMGPSGPPGPPGAAGPPGPPGSGINFISEPFQEKAPDPFRGGHYRA
DDPNMMRDRDMEVDTTLKTLTQKVEIIRSPDGTQKSPVRMCRDLKMAHPEWKSDMFWVDP
NQGSPLDAIKVHCNMETGETCVYPSESSIPMKNWYLSKNIREKKHVWFSESMTGGFQFQY
GSNGADPEDVNIQMTFMRLMSNQASQNMTYHCKNSIAYMDSATGNLKKALLLQGTNDVEI
RAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVEV
GPVCFL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgccacagtgcttctggcg
agaggacaaggcgaggatgatagctcatttggcagctgcacattagaaggacagttgtac
aatgacaaggatgtatggaaaccagagccctgccagatctgcgtttgcgatagtggcacc
gtcatgtgcgatgaggtgatctgtgaggacacatccgactgcaccgatcccatcatccct
gatggagagtgctgccctatctgccccgatgaaaccgaggacacatctacacctcagcca
ggaaaccagggtcccaaaggagacgagggtccagttggtcctcctggcaacgatggactt
gatggacagcctggtgttcccggccctcccggcccccctggcccccctggccttggcgga
aacctccgtcctcagatgagctatgttgaccactccaaatccagcggcccacctgtccct
ggccccatgggtcctatgggtcctcgtggtccttctggatcccctggctcctctggtcct
cagggtttcaatggtcccccaggagagcccggtgagcccggagcttctggtgccatgggt
cctcgtggtcccgccggacccctcggaaagaacggagatgatggtgagcccggcaaagct
ggtcgccccggtgagcgtggagccgctggccctcagggtgctcgtggattccccggaacc
gctggacttcccggcatcaagggacacagaggattcagcggtctggatggagctaaggga
gacggtggacccgctggccccaagggagagtctggttcagctggtgagaacggtatcccc
ggtgccatgggcgctcgtggtcttcctggtgagagaggtcgccctggagctcctggacct
tctggtgctcgtggtaatgatggaaacactggtgctgctggtccccctggacctaccgga
cctgctggttctcctggtttccccggtggtgctggtgctaagggagagactggccctgct
ggtggacgtggaaatgagggaccccagggagcccgtggtgaggctggtaaccccggacct
tctggacccgctggagctgctggtgcccccggatctgatggctctgctggtggtaagggt
tctcctggtgctgctggtattgctggtgctcctggtttccccggcgctcgtggtcctgct
ggatctcagggtgctgtcggtgctcccggtcccaagggtaacaacggtgaccacggtcct
actggttctaagggagagcctggtgtgaagggagagcctggccccgctggagttcaggga
cttcctggtgcctctggtgaggaaggcaagagaggaggacgtggagagcccggtggtgct
ggagcccgtggacccaatggagagcgtggtgcccctggtgctcgtggtttccctggtgct
gatggaggtgctggtggcaagggaggccccggtgagcgtggtgccaacggcccagctgga
cctcagggagccaccggtgagtctggtatccccggtggtgccggcgcacctggacccaag
ggtatgactggtagccccggaacccctggccccgatggaaaagctggaccagctggttcc
cccggccaagatggacgcactggacctgctggtgctactggatcccgtggacagcccgga
gttatgggattccccggaccaaagggagttgctggtgagaacggtaagcccggtgagaga
ggacccactggagccactggcgcccttggtgctcctggcaaagatggtgatgttggtgct
cctggaccttctggtgttgctggacctgctggagagaagggagagggtggacccgccgga
ccctctggattccagggtcttcctggaccccaaggtgctactggtgagactggcaagcct
ggtgagcagggtggtcctggtgaggctggacccagcggcccatctggaccaagaggtgac
agaggtttccccggtgagcgcggtgcccctggcggtgctggcccaactggaagccgtggt
gctcctggccctgctggtaacgatggagccaagggagagcctggtgctggtggtgccccc
ggcggtatgggatcccccggtatgcagggaatgcccggtgagcgtggttcttctggtctc
cctggtgccaagggcgagagaggtgatgctggagccaagggaggtgatggttccgctggc
aaagacggcatgcgcggtatgactggtgctattggagttcctggaccccatggtgctcag
ggtgagaagggtgagcctggcgctgttggagttgctggacctaccggacctcgtggtgcc
cctggtgagcgtggagagactggaccttctggacccgctggattcgctggacctcctggt
gctgatggtcagcctggtgccaagggagagtctggtgactctggacccaagggagacggt
ggtgctcctggacccgctggacccgtcggtggtgctggacctcagggaccttctggaccc
actggacctaaaggtgctcgtggtggtgctggaccccctggtgctactggcttccccgga
cctgctggaagagttggaccccctggcccctctggagctagtggaccccctggacccatg
ggaccccttggcaaagatggagcaagaggaggtcgtggtgagaccggccccgctggtcgc
cccggtgaggctggagctactggaccccaaggactttctggagagaagggatctgttggc
tctgatggtgcccctggtccctctggtatccccggaccccaaggtgttgttggacagcgc
ggtattgtaggtcttcctggacagcgtggagagcgtggtttctctggtctgcccggaaca
tctggcgagcccggaaagcagggacctgctggtcttcatggtgagcgtggaccccccgga
cctgctggaccccctggtctgaccggtcctactggagaagctggacgtgagggatctgcc
ggacacgatggtgctcctggtcgtgatggagctgctggccccaagggagaccgtggagag
tctggtatgtctggacccccaggaccccctggtgctcctggagcccctggagctgttggc
ccctctggcaaatctggtgaccgtggagagtctggagctgctggttctcccggccctgct
ggccctgctggtgtccgtggccccgctggacccgctggtgcaaagggagacagaggagag
gctggtgaggcaggagatagaggacacaagggacacagaggattcaccggcatgcagggt
ctgcccggcacctccggaggatctggagagagaggacctgctggtgcttctggacctgct
ggacccagaggaccttctggatctaacggctcccctggtaaggatggcatgaacggtctg
cctggacccatcggaccccctggacctcgcggtcgcaatggagagatgggaccttccgga
ccccccggacctcccggagccgctggacctcccggacctcccggcagtggaatcaacttc
atcagcgagccttttcaggagaaggcacccgatcccttccgcggcggccactaccgcgct
gatgaccccaacatgatgcgcgatcgcgacatggaggtcgacactaccctcaagaccctg
acccagaaggttgagatcatccgcagcccagacggtacccagaagagcccagtccgcatg
tgccgtgacctgaagatggcccaccccgagtggaagagcgacatgttctgggttgacccc
aaccagggatcccctctggatgctatcaaggtccactgcaacatggagactggcgagact
tgcgtctaccccagcgagtccagcatccccatgaagaactggtacctcagcaagaacatc
agagagaagaagcatgtctggttcagcgagtccatgaccggtggattccagttccagtat
ggcagcaatggagctgatcccgaggatgtcaacatccagatgaccttcatgcgcctgatg
tccaaccaggcctctcagaacatgacataccactgcaagaacagcattgcctacatggac
tccgccaccggcaacctgaagaaggctctccttctccagggaaccaacgacgttgagatc
agagccgagggcaacagccgcttcacatacagcgtcagcgaggatggctgcacgtcacac
actggctcatggggtaagacagtcatcgactacaagacatcaaaaacatcccgcctgccc
atcattgacattgctcctatggatgttggtgcacctgatcaggaatttggcgtcgaagtt
ggccccgtctgcttcttgtaa
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integrated database retrieval system
