Eublepharis macularius (Leopard gecko): 129343820
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Entry
129343820 CDS
T09084
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129343820 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129343820 (CNOT1)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129343820 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129343820 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
129343820
NCBI-ProteinID:
XP_054856159
UniProt:
A0AA97LHW5
LinkDB
All DBs
Position
16:complement(12527014..12634887)
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIENPLHYQKSLKPSPHLFTQLSKVIK
LSKVQEVIFGLALLNSFNPDLRGFAAQFIKQKLPDLLRSYIDADVGGNQEGGFQDIAIEI
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIITQFGVGEVTAAQVARVLGMMART
HSGLADGIPLQSISAPGSGIWSDGRDKNDGTQTHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQVRDSKGLQIVVYGVQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADFPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
NLGGSAAPHTQSMPGFPPNLGSAFSTPQSPAKAFPPLSTQNQNTPFSGIGGLSSQLPVGG
LTTSSLSIGTGALSLPAVNNDPFVPRKLSTSGLNPPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQAPAKTPLAGQVSTIVTTSTTTTTVAKTTITPVGRVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLSETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMA
IMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKK
DVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIP
LFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQDNCE
LACCFIQKMAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGILAQPMKQAWATDDVAQIYDKCMTELEQ
HLQSVPHTLPMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADSDLL
LRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVSMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRGN
APEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQ
AEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEAANTVTKINLLNKVLGIVVGVL
LQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELAKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
LSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggc
cctgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagcggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtca
ctgattacgaagccaaactttatttcgacgctgtcctatgctattgaaaaccctttgcac
tatcagaagagtcttaagccatcacctcatctgttcactcagctgagcaaagttatcaaa
ttaagcaaggttcaagaggttatttttggtcttgctttgctgaactctttcaacccagat
ctacgaggttttgctgctcagtttattaaacagaagcttccagatcttctacgttcgtac
attgacgcagacgttggtggaaatcaagaaggtggcttccaagacattgcaatagagatc
ttgcacctcctcctttcccatcttctttttgggcagaagggagcctttggggttggacaa
gaacagattgacgcttttctcaaaaccttacgtagagattttccccaggaacgttgccct
gtggtgcttgcaccactcctctaccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggattgcaaaaacaatgatggagagttcgctggcagacttcatgcag
gaagttggctatggtttttgcacaagtgtggaagaatgtcgcaacatcatcactcagttc
ggtgttggggaggtcacagctgcccaggtggccagggttttgggaatgatggctcgaacg
cactcgggattggcagacggtattccattacagtccatctctgctcctggcagtggaatt
tggagtgatggaagagataaaaatgatggaacgcaaacgcatacatggaatgtagaggtt
ctgattgacgtgcttaaggaactgaacccaagtttgaacttcaaggaagtaacctatgaa
ttagatcaccccggatttcaagttcgcgatagtaaaggcttgcagattgttgtgtatggt
gtacagagagggctaggacttgaagtctttccagttgacctcatctacagaccttggaaa
catgcggaaggccagctctcattcatccagcattccctcattaacccagagatcttctgt
tttgctgacttcccctgtcataccgttgccacagatatcttgaaagcaccgcctgaggat
gacaatcgagaaattgccacatggaagagcctggacttgatagagtcattgttgcggttg
gcagaggtgggccagtatgaacaggtcaagcagctcttcagcttccccatcaagcactgt
ccggacatgttggtattggccttgctgcagatcaacacttcctggcatactttgcggcat
gaactaatctctacacttatgcccattttccttggcaaccatcccaactctgccatcatc
ttgcattatgcatggcatgggcagggtcagtctccttcaattcgccaactcatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattatcacgtatc
ctagatgtggcacaagacttgaaggcgttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaactagacaaatgg
ctcacagataaaattcgggagcatggggaacccttcatccaagcctgtatgactttctta
aaaagaagatgcccttctatcttgggtggccttgctccagagaaagaccagcccaaaagc
gctcagcttcctccagagaccttggcaactatgctggcttgcttgcaagcttgtgcagga
agtgtctcacaagagctgtcggaaactattctcacaatggtggccaactgcagcaatgtc
atgaacaaagctcggcagccaccaccgggagtcatgcccaaaggacgcccacccagtgcc
agcagtctggatgccatctctcctgtacagatcgacccgcttgctggaatggcatctctc
aatttaggtggttcagcggctccgcatacccagagtatgcctggttttccaccaaacctg
ggttcagcctttagtactcctcagtcaccagcaaaagcatttcctccactttctacgcaa
aaccagaacacaccgttcagtgggattggtggcctctcatcacagcttccagtcggtggt
cttacaacaagcagtctcagtataggaactggggccctcagcctccctgcagtgaataat
gacccatttgtgccaaggaaactgagcacatcaggattgaacccgcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtatggccagaggcaaatcagcactttagc
aaagagattgatgacgaagccaacagttattttcagcgaatttataatcaccctccgcat
ccaactatgtctgtagatgaggtgttagaaatgctgcagaggtttaaagactccaacatt
aaacgggaacgtgaagtatttaactgtatgctgaggaacttgtttgaggagtatcgcttt
ttcccccagtacccagataaagaactacacataacagcctgcctgtttggtgggataata
gagaaaggactggttacatatatggcactgggcctggccttgcgctatgttcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttccctcatcacctgcaggagtatattgaatatggacagcaatcaagagaccct
cctgtgaagatgcagggctcaatcaccacccctggaagtattgcacttgcccaagctcag
gcccaggctcaggccccagcaaaaacgcctcttgctggtcaagtaagcactatagtaacc
acctccaccacaacaactactgtggcaaagaccacgatcactcccgtgggccgagtcagc
ttcaagaaggatgtgccgccatcgattaatacaaccaacattgataccttgctagtggcc
acagatcagacagagagaattgttgaaccccctgaaaacgttcaggaaaagattgccttt
atcttcaacaacctgtctcaatcaaatatgactcagaaggttgaggagctgaaggaaacc
gtgaaagaagagttcatgccttgggtttcacagtatctcgtgatgaagagagttagtatt
gagccgaacttccacagcctctactcaaatttcctcgacacgcttaagaatccagaattc
aacaaaatggttcttagtgaaacctacagaaatatcaaggtactgctcacatctgataaa
gctgctgccaacttctctgaccgttctctgctgaagaacctgggtcactggttggggatg
atcacactggcgaagaacaagcccatcttgcacacggacttggacgtgaaatccttgctg
ttggaggcttacgttaagggccagcaggagctgctgtatgtcgtgccatttgttgccaaa
gtcttggaatcgagcgtaagaagcgtggttttcaggcctcccaatccttggacaatggcg
atcatgaatgtactcgcagagttgcatcaggaacacgatttaaaactgaacttgaagttt
gagatcgaagtgctctgcaagaaccttgctcttgacatcaatgagctgaaacctgggaac
ctcttgaaggacaaggatcggctgaagaacctggacgaacagctgtctgctccaaagaag
gatgtgaaacagccggaagagttgccgcccatcacgaccaccactgcttccacaacacca
gctaccagcaccacgtgcaccgctaccgttcctccccagccccagtacagttaccacgat
atcaacgtttactccctgggagggctggctccacatattactcttaacccaactattccc
ttgtttcaagcacacccacagttaaagcagtgtgtgcgccaggccatcgagcgtgcggtc
caagaacttgtgcatccggtggtggatcggtccattaaaatagccatgaccacatgcgag
cagatagtgaggaaagattttgcgctggactctgaagagtcacgcatgcgtgtagcagca
catcacatgatgcggaatttgactgctggcatggctatgattacctgccgggagccgttg
ctgatgagcatagctaccaacctgaagaacagctttgctacggcactgagggctgcttca
ccacagcagagggagatgatggagcaggctgctgcccagctggctcaggacaactgtgag
ctggcatgctgcttcattcagaagatggctgttgagaaggcaggccccgaaatggacaag
cggctggccactgaatttgagcttagaaagcatgccagacaagagggccgtaggtactgt
gatcctgtagtgctgacctaccaggctgagcggatgccggaacagatcagattaaaggtt
ggtggtgtagacccaaagcagctcgctgtttatgaggaatttgcacgcaacgtccctggt
ttcttaccaactaatgacttaactcagcccacaggaatcctggctcagcctatgaagcaa
gcctgggcaactgatgacgtagcacagatctatgacaaatgcatgacagaactggaacag
cacctgcagtccgttcctcacaccctgcccatgaatcctcaaacccaagctttacgaagc
ctcttggaagccgttgtcgtggctcgcaattctcgtgatgctattgcagctcttggactg
ctccagaaggctgttgagggcctgctggatgccaccagtggtgcggattccgatcttctc
ctccgctatcgggagtgtcacttgctcgttttgaaagccctgcaggacggccgtgcttat
ggctctccgtggtgtaataagcagatcacaaggtgcctgattgaatgtcgagatgaatat
aaatacaatgtagaagcagtagagctgctgatacgtaaccacctagttagcatgcagcag
tacgatcttcacttggctcagtcgatggagaatggcttgaactacatggctgtggcattt
gcaatgcagttggtgaaaatcctcttggtggatgagagaagtgtagctcacataacggag
gctgatctgttccacaccattgaaactctgatgaggattaacgcccactcccgagggaac
gcaccagaagggttgccacagctgatggaagtggtgcgctccaactatgaagccatgatt
gaccgtgctcacggaggaccaaactttatgatgcattctggaatctctcaagcctccgag
tatgacgatccccctggcctgagggaaaaggcagaatatctgctgagggaatgggtcaac
ctctaccactctgctgccgctggtcgtgacagtaccaaagcattctcggcgtttgttgga
caggtagagcttttggaaagaaagatgcatcaacaaggaatcctgaagaccgacgacttg
atcacacgattctttcgcctttgcacagagatgtgtgtggagatcagctaccgtgctcag
gcagagcagcagcacaaccctgctgcaaaccccaccatgatccgtgccaagtgctaccac
aatctggatgcctttgtgcgccttattgcgctgctggtgaagcactctggggaggctgcc
aacaccgtcaccaagatcaacttgctcaacaaggttcttgggatagtggtgggagtcctg
ttgcaagatcatgatgttcgccaaagtgaatttcagcagctcccttaccaccgtattttc
atcatgttgctgttggaattaaatgctcctgaacatgtcctggaaacaataaattttcag
actctcacagcattctgtaacacgtttcacatcctgagacctacgaaagctccaggtttt
gtttatgcttggttagaattgatctcccaccggatatttattgcaagaatgctggcacat
acaccacagcagaagggctggccaatgtatgctcaactgctgatcgacctatttaaatac
ttggctcctttcctgagaaatgtggagcttgccaaacctatgcaaattctctacaagggc
accttgcgtgtgttgctggtcctattacatgatttcccagaatttctctgtgactaccac
tacgggttctgtgatgtgattcctccgaactgcatccagctaaggaatctgatcttgagt
gccttcccacgcaatatgaggcttccagatcccttcactcctaaccttaaggtggacatg
ttgagtgaaatcaacattgctcctcggatcctcaccaacttcacgggtgtgatgccgcct
cagttcaagaaggatttggattcctatctcaagacgcgctctcccgtcacgttcttgtct
gacctgcgcagcaatctacaggtgtcgaatgaacctggcaatcgttacaatatccagtta
ataaatgccctggtgctgtatgtaggtacccaggctattgcacacattcacaataaaggc
agcactccttccatgagcaccatcacccactcggctcatatggacatcttccagaatctg
gctgtagacctggacacggaaggtcggtacctcttcttaaacgcaattgccaatcagtta
cggtacccaaacagtcacacgcactatttcagctgtaccatgctttacttatttgcggaa
gccaacactgaagctattcaagaacagatcaccagagttctcttagaacggctgattgta
aataggcctcacccatggggcctgctaattacctttattgagctgattaaaaacccggcc
tttaaattctggaaccatgagtttgttcattgtgctccagaaattgaaaagctgttccag
tccgtggcgcagtgttgcatgggacagaaacaggcacagcaagtgatggaaggaactggt
gctagttag
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integrated database retrieval system
