Enterococcus mundtii: EMQU_2712
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Entry
EMQU_2712 CDS
T02931
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emu
Enterococcus mundtii
Pathway
emu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EMQU_2712 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emu03400
]
EMQU_2712 (mfd)
Enzymes [BR:
emu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EMQU_2712 (mfd)
DNA repair and recombination proteins [BR:
emu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EMQU_2712 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAO08269
LinkDB
All DBs
Position
complement(2809989..2813510)
Genome browser
AA seq
1173 aa
AA seq
DB search
MDMIQLIGKDAQVAEWSMNLEQRMSRQLITGLAGSAKTLLFAHAFKKLDKNLIILMPNLY
YVNQLAEDLQHVLPAESIHLFPVDEVLSAEMAFSSPEARAERVATLNRLQQDEPGIYLLP
VAALHKRLPDKETWSNAQLHWQIGDEIAVDSLPQQLVLLGYERTEMVAKPGEFSMRGSIV
DIYPLTFEYPVRVELFDVEIDSMRYFEADTQRSIEKIEEVWLPPTSEQIYSQENLLDGIN
KIENLLEKKLATTAEPTERQFLHDYFGQLISEWQRNVPTDQAKFYADLLYPEHLSILDYF
PQDSLLIVDDYQRIMETNREMEREAAEWHTQKISELRVFSEQQFVADVHGIIQKEKFATT
FFSLFQKGMGNLRFQALYQFQYRTMQQFFGQMPLLKTEMDRWRKQEQTVVIFIPTKERIR
KAEQMLRDEDILVVETEADQLIKGQVQLVEGALMTGFELPQEKIVTITEKEIFQKTTKKQ
TRRQTVTNAERLKSYNELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTIIYQNDDKL
FIPVTQLNLIQKYVASESKTPRINKLGGSEWTKTKRKISSKIEDIADDLIQLYAVREAEK
GYAFGPDDSYQKEFENAFPYSETDDQLRSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVAL
RAAFKAVKESKQVAFLVPTTILAQQHYETMLERFEGFPVNVGLLSRFRTKKQQKETIEEL
RTGQLDIVVGTHRVLSKDIEFSDLGLLIVDEEQRFGVKHKERLKQLRAQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIQREMGRGGQVFYLYNRV
ETIERKVEEIQALVPEARIAYAHGQMTEVQLENTLFDFIEGQYDVLVTTTIIETGVDIPN
ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSEAVARKQGKNQQIEKTSVE
IDLGVDAYLPESYVSDQRQKIEIYKRIRELDSQEMLEELEADLLDRFGEYPEEVAHLLTI
GQIKMDGDRALLEMIRKQQQTIVFKLSKVGTKRYTVEQLFEALTATKLKAGLGVEKEQMM
IRLTLPPQTTTAVWLQEIQQFVKALREQKYATA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggatatgatccaattgattggcaaagatgctcaagtggctgaatggtccatgaatctt
gaacaacggatgtctagacagttgattacaggtttagctggatctgctaagacgttgttg
tttgcacatgcgtttaaaaaactggataaaaatctgattatcctgatgccaaatttatat
tacgtcaaccaattggcagaggatctgcaacacgttctgccagctgaaagtatccactta
tttccagtagatgaagtgctttccgcagaaatggctttttcttctcctgaagctcgggct
gaacgtgtagcgacgttgaatcgtttgcaacaagatgagccaggaatctatcttcttcca
gtggcagcattgcacaaacgtcttcctgataaagaaacatggagcaatgcccaattacat
tggcagattggcgacgagatcgccgtggactcattaccgcaacaactcgtcttgttgggg
tatgagcggacagagatggtcgcaaaacctggggaatttagtatgcgagggagtattgtc
gatatctatcctttgacatttgaataccctgttcgtgtggaattatttgatgtcgaaatt
gattccatgagatacttcgaagctgatacgcaacgatcgattgaaaagatcgaagaagtg
tggttgccaccaacaagtgaacaaatttattctcaagagaatctgcttgacggtatcaac
aaaatagaaaacctcttagaaaagaaattagcaacgaccgcagaacctactgaacgacaa
tttttgcatgactatttcggtcagttgatctcggagtggcaacgtaatgtcccgacagac
caagcgaagttctatgcggatcttttgtatcctgaacatttatcgattttggattatttt
ccccaagatagcttgctgattgtggacgattaccaacgaatcatggaaacgaatcgcgaa
atggagagagaagcagcggaatggcatacacaaaaaatcagtgagttacgcgtattctct
gaacaacaatttgtggcagacgtacatgggatcatccaaaaagaaaaatttgcgaccact
tttttctctttattccaaaaaggaatgggaaatctcaggttccaagcactttaccagttc
cagtatcgcacgatgcaacagttctttggacaaatgccattgctgaaaacggaaatggat
cgttggcgcaaacaagagcagacagtcgtcatcttcattccaacgaaagaacgtatccgt
aaggcggaacaaatgttgcgtgacgaagacatattagtggtagaaacagaagcagaccaa
ctgatcaaaggacaagtccaattagtcgaaggcgcattgatgacaggttttgagttgccg
caagaaaaaatcgtaacgatcacggaaaaagagatttttcaaaagacaacaaaaaaacag
acacgtcgtcaaacggtaacgaatgcagaacgactaaaaagctacaacgaattaaaagct
ggagattacgttgtccatgcgaatcatgggatcgggaaatatatcggtatggaaacctta
gaggtcgacggtgtccaccaagattatatgacgatcatttatcaaaatgatgataagcta
tttattcctgtcacgcagttgaatttgatccaaaaatatgtagcttcggaatcgaaaaca
ccacgaatcaacaaactcggtggtagtgaatggacgaaaacgaaacgtaagatctcctca
aaaatcgaagatattgcggatgacttgatccaattgtatgcggtcagagaagcagaaaaa
ggatacgcatttggtccggatgactcttatcaaaaagaatttgagaatgcttttccatat
tcggaaacagatgaccaactccgaagtgcggcggaaatcaaacgagatatggaaaaagaa
aaaccgatggatcgtttacttgtgggggacgtcggctatgggaaaacagaagttgcgcta
cgtgccgcttttaaagcagtcaaagaaagtaaacaagtggcatttcttgtgccgacaaca
atcttggcgcaacaacattacgaaacgatgttggaacgatttgagggattcccagtgaat
gttggtttgctgagtcgtttccgaacaaagaaacaacaaaaagaaacgatcgaagaatta
cgaacaggacaactagatattgttgtgggtactcatcgtgtattgtcaaaagatattgaa
tttagtgatttaggactattaatcgttgatgaagaacaacgtttcggtgtaaaacacaaa
gaacgtttgaaacaattgcgtgcgcaagtggatgtgctgactttgacagcgacacctatt
ccgcgaacgctgcatatgtcgatgctaggcgtacgggatctatcggtgattgaaacacca
ccggcgaatcggtatccgatccaaacatatgtgatggaaaaaaatccaggtgcgatccga
gaagcgattcagcgagagatgggacgtgggggacaagttttctacttatataatcgtgta
gaaacgattgaacgtaaagtagaagaaatccaagcattagttcccgaagcgagaatcgcc
tatgcgcatggacagatgacggaagtccaactagaaaacacattattcgactttatcgag
ggacagtatgatgtcttagtgacgacaacgatcatcgaaactggtgtggatattccaaat
gcaaacacactcttcgtagaaaatgccgattatatgggactctctacgctttaccaatta
cgaggacgtgtcggacgaagcaatcgtgtcgcttatgcttattttatgtacgaacagcaa
aaaatccttaatgaagtcagcgaaaagcgtcttcaagcaatcaaagactttacggaattg
ggttcaggatttaaaatcgcgatgcgagatttatcgatccgtggtgctggtaacttgcta
ggggcgcaacaacatggatttatcgatgctgttggttttgatatgtactctcaaatgttg
agtgaggcagtcgctcgtaaacaaggtaaaaatcagcaaatagaaaaaacttctgtggag
atcgatctaggcgtcgatgcctatctaccagaaagttatgtgtcagatcaacgccaaaaa
atcgaaatctataaacggattcgcgaattggattcacaagagatgttggaagaattagaa
gcagatctactggatcgttttggtgaatatcctgaagaagtcgcgcatttgttgacgatt
ggacaaatcaaaatggatggcgatcgtgcattgctagagatgattcgtaagcaacaacaa
accatcgtgttcaagttgagcaaagtgggaacaaaacgctacacggttgaacaattattt
gaagcgctgactgccacaaaattaaaagcaggacttggtgtggaaaaagaacaaatgatg
attcgtttgaccttgccacctcaaacaacgactgctgtttggttgcaagaaatccaacaa
tttgtcaaagcattgcgcgaacagaaatatgcgactgcatag
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