Emticicia sp. 21SJ11W-3: MB380_01295
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Entry
MB380_01295 CDS
T09449
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
emz
Emticicia sp. 21SJ11W-3
Pathway
emz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MB380_01295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emz03021
]
MB380_01295 (rpoB)
03400 DNA repair and recombination proteins [BR:
emz03400
]
MB380_01295 (rpoB)
Enzymes [BR:
emz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MB380_01295 (rpoB)
Transcription machinery [BR:
emz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MB380_01295 (rpoB)
DNA repair and recombination proteins [BR:
emz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MB380_01295 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UTA68455
LinkDB
All DBs
Position
315458..319315
Genome browser
AA seq
1285 aa
AA seq
DB search
MSLTVTGRKSFATVFPAIDYPDFLDVQVRSFQDFFQIDTPAESRKKEGLYNVFAENFPIA
DSRENYVLEFVDYTIDPPKYSVDECIDRGLTYAVPLKAKLRLICNDADNEDFETIEQEVF
LGNIPYMNERGSFVINGAERVIVSQLHRSPGVFFSMSKHTNGTKLYSARVIPMKGSWIEF
STDVNNVMYAYIDRKKKFPVTTLLRAIGFGSDKEILNLFGLSEEIPGSKEALTKAIGRRL
AARVLRTWTEDFVDEDTGEVVSIDRNEVILERDSIISEGDIDIILSTEQKSVILHREDAN
VSEFNIIYNTLQRDSSNSEKEAVEQIYRQLRNTEAPDEATAREIIQGLFFSDKRYDLGEV
GRYRVNTKLNLTTPLETGVLTTEDIVEIVKFLISLINSKAVVDDIDHLSNRRVRTVGEQL
YAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCTYAK
INSMGFIETPYLKIENGKLTSELIYLTAEEEDGKNIAMATADVDKEGNFLVDTLKCRYEG
DFPMKTPDSIDYMDIASNQIVSVAASLIPFIEHDDANRALMGSNMQRQAVPLLRPEAPIV
GTGLEGRLARDSRTLVVAEEDGVIEFVDANMIKVRYNWTKEQNLVSFDTNVTTYELIKHR
RTNQDTCINIRPIVLKGQEVKKGQILVEGYATQGGELALGRNLLVAFMPWQGYNFEDAIV
ISERVVREDIFTSIHIEEYELEVRDTKRGEEELTAEIPNVSEETVKNLDENGIVRIGTRV
KEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASKKAPPSMDGVIIDTKLFSRP
SKEERSKHKDELKALMKKHSRALIELRDRMLDKIVELLDGKTSAGVKHKFGDELISKGVK
FNRSNIANNLFPDKNNYVDESQYNVPEEVNLLGDVILDGWTDELDTNKLVVALCKNYLAR
RSEVIGRFKRERFVLEVGDELPAGIVKLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVR
DEDMPFLEDGTTMDIVLNPLGVPSRMNIGQLYEVVLGLAGRKLGRKYATPIFDGATEQQV
SAELSEAGLPPFGRSQLYNGLSGEPFDQKVTVGIMYMMKLGHLVDDKMHARSIGPYSLIT
QQPLGGKAQFGGQRFGEMEVWALEAFGASHILQEILTVKSDDVVGRAKAYEAIVKGENLP
KANIPESFNVLVHELRGLALEITLQ
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcttacagtaaccggtagaaaaagttttgcaacggtttttcctgctattgattat
cctgattttctggatgtgcaggtaagatcgtttcaggatttcttccagattgacacacca
gccgaaagccgcaaaaaagaagggctttacaatgtgtttgctgaaaacttcccaatcgcc
gattcacgcgagaactacgtattggagtttgttgattatacaattgacccaccgaaatat
tcggtagatgagtgtatcgacagaggtcttacttacgcagttcctttaaaagcgaaatta
cgtttgatttgtaatgacgccgataacgaggatttcgagacgattgagcaggaagtattc
ctgggcaacattccttatatgaacgaaagaggttctttcgttatcaacggtgccgagcgc
gttatcgtttctcagctgcaccgttctccgggtgtattcttctctatgagcaagcataca
aacggaaccaagctttactctgcccgtgtgattccgatgaaaggttcatggatagagttc
tctacagatgtaaacaacgttatgtatgcttacattgaccgtaagaagaaattcccggtt
actacacttcttcgtgccatcgggtttggttctgataaagaaatcctgaacctgtttggt
ctttcagaagaaattccgggttcaaaagaagcccttaccaaagctatcggccgtcgctta
gcagcacgtgttctgagaacctggactgaggactttgttgacgaggatacaggtgaggtg
gtatcaattgaccgtaacgaagtgattttagaacgtgactctatcatttcggaaggtgac
attgatattatcctgagcacagagcagaagtcggttattttacaccgcgaagacgccaac
gtttcagaattcaacattatttataacactttgcaacgcgatagctcaaactctgaaaaa
gaggccgttgagcaaatttatcgccagttgcgtaacacggaagctcctgatgaggccact
gcccgtgagattatccagggcttgttcttctctgacaaacgttatgatttaggagaggta
ggtcgttaccgtgtaaacacaaaactgaacctgacaactccattggaaacaggggtgcta
accactgaagatattgttgagattgttaagttcttaatcagccttattaactctaaggcg
gttgtcgatgatatcgaccacctttcgaatcgtcgtgtgcgtacagtaggcgagcagctt
tatgcccagtttggcgtaggtctggcgcgtatggcacgtaccatcaaagaacgtatgaac
gttcgtgataacgaagatttcaaacctgttgatttgattaatgcccgtacgctttcgtcg
gttattaactcattcttcggtaccaaccagctgtcgcagtttatggaccaaaccaaccca
ctggccgagattacgcacaaacgtcgtatgtctgcccttgggccgggaggtttgagccgc
gagcgtgccggtttcgaggttcgtgacgttcactatacccactatggtcgtttgtgtacc
atcgaaacgccagaggggccgaacatcggtcttatttcatcgctttgtacgtatgccaaa
atcaacagcatgggcttcattgaaaccccatacctgaaaattgagaatggtaaacttacc
agcgaactgatatatctgacagccgaagaagaagatggtaaaaacatagccatggctacg
gccgatgtagataaagagggtaacttcctggttgataccttgaaatgtcgttatgagggt
gacttcccgatgaagactcctgattcaattgactacatggacattgcctctaaccagatt
gtatcggttgctgcatcgttgattccgtttattgaacacgatgacgccaaccgtgccctg
atgggttcaaacatgcaacgccaggcagtgccattgttacgccctgaagcgccaattgta
ggtacaggtcttgaaggccgcctggctcgtgactcacgtacccttgtagtagcagaagaa
gatggtgtgattgagtttgtggatgctaacatgattaaggtacgttataactggaccaaa
gaacaaaatctggttagtttcgataccaacgttaccacctacgaattgattaagcatcgt
cgtaccaaccaggatacctgtatcaacatccgtccgattgtattaaaaggacaggaagtg
aaaaaaggtcagattctggtagaaggatatgctactcagggtggagaacttgcattgggt
cgtaacctgttggttgctttcatgccttggcagggatacaactttgaggatgccatcgta
atttctgaaagagttgtacgtgaagatatctttacttctatccatattgaagaatatgaa
ctggaagtacgtgacaccaaacgtggtgaagaggagctaacagctgagataccgaacgtt
tcggaagaaaccgttaaaaaccttgacgaaaacggtattgtacgcattggtacaagagta
aaagaaggagatatcctgattggtaagattacaccaaagggtgagtctgacccaacacct
gaagaaaaacttttacgtgccatctttggcgacaaagccggcgacgtgaaagatgcttcg
aagaaagcgccaccatcaatggacggtgtgattattgatacaaaattattctctcgccca
agtaaagaagaacgttcgaaacacaaagacgagctgaaagccctgatgaaaaaacacagc
agagctttgattgaattgcgtgacagaatgcttgataaaatcgtagaattgcttgacggc
aaaacttcggcaggcgtgaaacataaattcggtgatgagctgatatcgaaaggcgtgaaa
ttcaaccgttcgaatattgccaacaacttgttcccggataaaaacaattatgttgacgaa
agccagtataacgtgcctgaagaggttaaccttttgggagacgtgattctggatggttgg
acagatgagttagacaccaacaaactggtagtagcgctttgtaaaaactacctggctcgc
cgtagcgaggtaatcggccgtttcaaacgtgaaagattcgttcttgaagtaggtgatgag
ctaccggcaggtatcgtgaagcttgctaaagtttacattgctaaaaaacgtaaactaaaa
gtgggtgataaaatggcgggtcgccacggaaacaaaggggttgttgccagaattgtgcgt
gacgaagacatgccattcctggaagacggcacaacaatggatatcgtgctgaacccactt
ggggtaccttctcgtatgaacatcggtcagctttatgaagttgtactgggtcttgcgggt
cgtaagttaggtcgtaaatatgctacaccaatctttgacggcgctactgagcaacaggtt
tcggcagagttgtcagaagcggggcttcctccgtttggtcgttcgcagctatacaacggt
ctttcgggtgagccattcgatcagaaagttacggtaggtatcatgtacatgatgaaactg
ggccacttggttgatgataaaatgcacgcccgttctatcggaccatactctcttattaca
caacaaccgctgggtggtaaagcacagtttggtggtcagcgtttcggagagatggaggtg
tgggcgcttgaggcctttggtgcgtctcatatcctgcaggagattctgacagttaagtct
gacgacgtggtgggccgtgcgaaagcatacgaggctatcgttaaaggagaaaaccttccg
aaagccaacatcccagagtcatttaacgtattagtgcacgagctgagaggccttgcactt
gaaattaccctgcaataa
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