Enterobacter sp. E20: NI40_000425
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Entry
NI40_000425 CDS
T04118
Symbol
ligB
Name
(GenBank) aromatic ring-opening dioxygenase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enx
Enterobacter sp. E20
Pathway
enx03030
DNA replication
enx03410
Base excision repair
enx03420
Nucleotide excision repair
enx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NI40_000425 (ligB)
03410 Base excision repair
NI40_000425 (ligB)
03420 Nucleotide excision repair
NI40_000425 (ligB)
03430 Mismatch repair
NI40_000425 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enx03032
]
NI40_000425 (ligB)
03400 DNA repair and recombination proteins [BR:
enx03400
]
NI40_000425 (ligB)
Enzymes [BR:
enx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NI40_000425 (ligB)
DNA replication proteins [BR:
enx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NI40_000425 (ligB)
DNA repair and recombination proteins [BR:
enx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NI40_000425 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NI40_000425 (ligB)
MMR (mismatch excision repair)
DNA ligase
NI40_000425 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NI40_000425 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALL15683
LinkDB
All DBs
Position
100529..102199
Genome browser
AA seq
556 aa
AA seq
DB search
MWRWISGLMLLWCGYGAAVCPVWSQAKAEKEMASLSAQIKRWDEAYWKQGVSEINDEVYD
QLHGRLTQWQRCFGSEPSEEKLPALAGSVKHPVAHAGVHKVASKEELRQWMRVRKHLWLQ
PKVDGVAVTLVYRDGKLTQAISRGDGLKGEDWTGKVHLIPSVPQNLTGALANSVLQGELF
WLRDNHIQQQLGGMNARAKVAGAMMRQKDNALLSKIGVFIWAWPDGPKDMRTSLAELSQA
GFPLSARYTLPADSVDAVEKQRAAWHVTALPFATDGIVVRSENEPAAEEWLPGEGHWVVA
WKYPPAAQVAEVSDIHFSVGRTGKISVVAALEPVQLDDKQVQRVSLGSVGRWQNLDIAPG
DQIQISLAGQGIPRFDKVLWRGTDRHKPEPPASRYHALSCFYASPECMEQFFARLTWLSS
KQVFDIEGLGESGWRTLWQAHHFEHLFSWLLLTQAQLQATPGFSSARGLALWHRFNLVRE
KPFIRWLMAMGVPLTQASLKAMGDISWQKMSGRNAKDWQTLPGTGEEKARKIVNWIHAPQ
IDVLAKWLAEQNINGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgatggataagcgggttaatgctgttgtggtgtggctatggcgcggcggtgtgt
ccggtgtggtcgcaagcaaaagcagaaaaagagatggcgtcgttaagcgcgcaaatcaaa
cgctgggatgaggcctactggaagcagggcgtgagtgagatcaacgacgaggtttacgac
cagcttcacgggcggttaacgcagtggcagcgctgttttggcagcgagccttcagaagag
aaactccctgcactggcgggaagcgtaaaacatcctgttgcccatgcgggcgtacataaa
gtggccagcaaagaggagttgagacagtggatgcgtgtccgaaagcatctgtggctgcag
cccaaagttgatggtgtggcggtgacgctggtctatcgtgacgggaagttaacccaggct
attagtcgcggtgatggcctcaaaggggaagactggaccgggaaggtacatttaatcccg
tctgttccgcaaaatctcaccggcgcgctggcgaatagcgtcttgcagggcgagcttttc
tggttgcgtgacaaccacattcagcagcagttgggcggaatgaacgctcgcgcaaaggtg
gcaggggcgatgatgcggcaaaaggataacgcgctattaagcaagatcggcgtattcatc
tgggcctggccggacggaccgaaagatatgcggacatctttagctgaactgtctcaggcc
ggttttccgttgtcggcacggtacacgctacccgccgattctgtcgatgccgtcgagaag
cagcgcgcggcctggcacgtgaccgcattaccctttgccacggatggcattgtggtgcgt
tcggagaatgaacctgcggccgaagagtggttaccgggagaaggccactgggttgtcgcg
tggaaatatcctcccgcagcccaggtcgctgaggtgagtgatattcatttttccgtgggg
cgcacgggcaaaatttccgttgtagcagcgctggaacccgtgcaactggatgataaacag
gtgcagcgggtgagtctgggctcggttgggcgctggcagaatctggatattgctccaggg
gatcagatacagatcagcctggccgggcagggtatcccccggtttgataaggtgctctgg
cgcggaacggacagacataaaccagagccaccggcctcacgctatcatgctcttagctgt
ttctatgcttcgccggagtgtatggagcagttctttgcccggctgacctggctcagttca
aagcaggtattcgatattgaaggattaggtgagtcaggctggcggaccctctggcaggcg
catcattttgaacatctcttttcatggctgttattaacgcaggcgcagctgcaggctaca
ccggggttttcctcagcacgcgggctggcgctctggcaccgatttaatctggtgcgcgag
aagccgtttatccgctggctcatggcaatgggtgtgccattgacccaggcttcgctgaag
gcgatgggagacatatcgtggcagaagatgagcgggcgcaacgcaaaggactggcagacc
ctgccgggaacaggagaggaaaaagcgcgaaaaatcgtaaactggattcacgcgcctcag
attgatgtgctggcgaaatggctcgctgaacagaacatcaacgggttctga
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