Eucyclogobius newberryi (tidewater goby): 140349560
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Entry
140349560 CDS
T10929
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140349560 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eny03019
]
140349560 (cnot1)
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140349560 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140349560 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
140349560
NCBI-ProteinID:
XP_072292045
LinkDB
All DBs
Position
Unknown
AA seq
2387 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLSSSNTDLRGFAAQFIKQKLPDLLRSYVDSDLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYVFCASVDDCRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGGGIWSDGKDKSDSSQSNTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFAIRDSKGLHIVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFTFPIKHC
PDMLVLALLQISTSWHQLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
NVSQELSETILTMVANCSNVMNKPRQPPPGVMPKGRAPSTSSLDAISPVQVDPLSGMGSL
NLGGTAPSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSSANPSTPFGGIGSLSSQLPGMD
SGPLGSGIGSGIGSSLGMPTVGTDPFSTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTVKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQ
TQPQPPGAPKVPQPGQTSTLVTTTTTTTTVAKTTTITRPTPSSFKKDVPPSINTTNIDTL
LVATDQNERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQNPW
TMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKNLEEQLSA
PKKEAKPPEELLPVSSTGDFVPFAAPPSTPAATTTPCTTTGPPTPQFSYHDINVYALAGL
SPHININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFAL
DSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFAAGLRAPTPQQREMMEE
AAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQA
ERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVA
QIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGL
LDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVE
LLIRNHLVNMQQYDLHLAQSMENGMHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIE
TLMRICAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLR
EKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEI
SYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGI
VVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPT
KAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQ
ILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPN
LKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNR
YNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNA
IANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIEL
IKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7164 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacaaagccagccagcaggaaatacagcacattgtgaatcgtcacggc
cccgaggcagacaggcatctcttacgctgtctcttctcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgcgtgtca
ctgatctcaaagccgaactttatctcaaccttgtgttacgccattgataatcccctacac
taccagaagagtttgaagccatcggcccatttatttactcaactgagtaaagttctcaaa
ctcagcaaggttcaagaggttatttttgggcttgctttacttagctccagtaacacagat
cttcgaggttttgctgcacaattcatcaagcagaaacttcccgaccttctacgatcatac
gttgactcagatctaggaggaaaccaggaaggtggcttccaagacattgctatagaggtc
ctgcacctactgctctcccatctgctgtttggccagaagggagccagtggagtagggcaa
gagcaaattgacgccttcctcaaaactctttgccgagattttccccaggagcgctgtcct
gtggtgctcgcaccactgttataccctgaaaaacgggacattctcatggacagaatcttg
ccagactcgggggagttagccaagaccatgatggaaagttcgcttgcagaatttatgcaa
gaagtgggctatgtcttttgtgccagtgtggatgattgcagaaacataatcctccagtat
ggggtaagagaagtgactgcaagtcaggtggccagggttttgggcatgatggcccgtacc
cattctggtcttactgatggaattccattacagtcaatctctgctccaggaggcggtatc
tggagtgatgggaaagacaagagcgatagctctcagtccaacacatggaatgttgaggtt
ctcattgacgttgtcaaagaagtgaatcccaacctaaacttcaaagaggtgacatacgaa
ctggaccacccaggttttgcaatccgtgatagtaaaggcctccatattgtggtgtatggc
attcagaggggattgggccttgaggtcttccctgttgatctcatctatcggccatggaaa
catgccgagggacagttgtccttcatacaacactccctgatgagccctgaagtgttctgc
tttgcggattacccctgccacacagtggccattgacatccttaaggcaccaccagaagat
gacaatagggaaatagctacctggaaaagtcttgaccttgtagaaagtcttctcagactc
tctgaagtgggtcactatgagcaggtgaagcagctgtttaccttcccaatcaagcactgt
ccagacatgctggtgctggcgctgctgcagatctctacgtcttggcatcaactgcggcat
gagctcatctcaacactgatgcccatctttttaggcaatcaccccaactctgccataatt
ctacattatgcctggcacggacaaggacagtctccttccatccgacagctcatcatgcat
tcaatggcagagtggtacatgagaggggagcagtatgaccaggcaaagctgtcccgtatc
ctggatgtggctcaagacttgaagtctctatcaatgctgctgaatggtactccatttgcc
tttgttattgacctggctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ttgacagacaagatcagagaacatggggaaccttttatccaggcatgtgttacattcctt
aaaaggcgttgcccttccattatgggtggtcttgctccagataaggatcaaccaaaaagc
gcccagttaccccctgagacattggctaccatgttggcatgtctacagtcctgtgcaggg
aatgtgtctcaagaattatctgagacgatactgaccatggttgcaaattgtagcaatgtc
atgaataaacccagacagccgcctcctggggtaatgcccaaaggccgtgccccaagcacc
agcagtctcgatgccatctctcctgttcaggtggatcctttgtctgggatgggatccctc
aacttgggtggcacagccccatctcacactcagagcatgcaaggtttccccacctcatta
agttcagcatttagtaacccccagtctcctgcaaaggcgttcccaccactgtccagtgcc
aacccaagtaccccatttggtggtattggcagtctgtcatcacagcttcctggcatggat
tctggtcctctgggctcaggcattggctctggcataggctccagtttggggatgccaact
gttggcactgatcccttcagtaccagaaagatgagcacaccaggcctgaatccaccaacg
tttcagcagactgacctttctcaggtgtggcctgaggcaaaccagcactttagtaaggaa
atagacgatgaagcaaatagctacttccagcgcatctacaaccacccacctcaccctact
atgtctgtggatgaggtgttggagatgttgcaaagattcaaagattcaaccgtcaaacga
gaacgagaagtgttcaattgtatgctacgtaatttgtttgaggaataccgcttcttcccg
cagtacccagacaaggaattacacataactgcttgtctttttggtggcattattgagaag
gggctggtcacttacatggccctggggttggcactgcgatatgttcttgaagccttaagg
aaaccttttggatcaaaaatgtattattttggaattgcagctttagatcggttcaaaaac
agattaaaggactatcctcaatattgtcaacatctagcatctattgcacacttcttgcaa
ttcccccatcatttacaagagtatatcgagtatggtcaacagtcacgggaccctccagtg
aagatgcagggctccatcacgactcctggcagtttggccctcgcccaggtgcaagcgcag
actcagccccaaccacctggggcccccaaagttcctcaacctggccaaactagcacactg
gttactactaccaccactaccaccacagtagccaagaccacaaccatcacaagaccaacg
cctagcagcttcaaaaaagatgttcctccctccataaacactacaaacattgacaccctc
cttgtggccactgaccagaatgaaaggattgtagaacctccagagaatatacaggaaaag
attgcatttattttcaacaacctttcacagtcgaacatgacccaaaaggttgaggagtta
aaggagacggtaaaggaagagtttatgccctgggtttcacagtatctggtgatgaagcgg
gtcagtattgagcccaattttcacagcctttactcaaactttcttgacacactgaagaac
ccagagtttgtgaagatggttcttactgaaacctatcggaatataaaggttcttttgact
tctgataaggcagcggccaatttttcagaccgctcactgctcaagaacttgggtcactgg
ctaggaatgattacgttggccaaaaacaaacccatactctatactgatttggaactaaaa
tctcttctactggaagcctatgtgaaaggccaacaggagttgctttatgtggttccattt
gtggctaaagttttggaatccagtcttagaagtatggtttttaggccccaaaatccctgg
accatggccatcatgaatgtgcttgctgagctgcaccaggaacatgatctcaagctaaac
ctcaaatttgaaattgaagttctgtgtaagaatctgtcattagacatcaatgatctaaag
ccaggaaacttgctgaaagataaagacaaactaaagaatttggaggaacaactttctgca
ccaaagaaggaggcaaaacctccagaggagctgctccctgtatcaagcacaggggacttt
gttccatttgcagcgccaccctcaaccccagctgccaccaccacaccctgcacaaccacg
gggcctccaacaccgcagttcagttaccatgacatcaatgtgtatgctttggctggcttg
tccccacacataaacataaatgccaatattcccctcttacaagcccaccctcagctcaag
cagtgtgttcgtcagtcagtcgaacgcgctgtccaggagttggttcatcccgtggttgat
aggtccatcaaaatagccatgacaacctgtgagcagatcatcaggaaggattttgccttg
gattctgaggagtcccgcatgcgtgtagccgctcaccacatgatgagaaacctgactgca
ggcatggccatgataacctgccgcgagcctttgctcatgagcattgcaaccaacctaaag
aacaactttgctgctggactcagggcaccaacccctcaacagagagaaatgatggaagaa
gctgctgcaaggattgctcaggacaactgtgaactagcctgttgcttcattcaaaaaacc
gctgtggagaaagctggccctgagatggacaagagactagccacggagtttgagctaagg
aaacatgcgcgccaagaagggcggcgctactgtgatcctgttgttttaacctaccaggct
gaacgcatgcctgaacagatcagactcaaggttggtggagtggatcccaaacaactggct
gtttatgaagagtttgccaggaatgttccaggtttcttacccagtaatgatctctctcag
cccactggcttcttggctcagccaatgaagcaacaggcatgggctacagacgatgttgct
caaatctatgataagtgcatggcagatttggagcagcatcttcatgccatccctccagca
ctcgctatgaacccattaactcaggcactgcgcagcttgcttgaggctgtagcgttggca
agaaactcaagagatggcattgctgcacttggcctccttcagaaggctgtggagggactt
ttagacgctaccagtggtgcagacgctgatttattgctgcgctacagagagtgccacctg
ctcgtgcttaaggccctgcaggacggacgtgcttatggaccacagtggtgcaacaagcag
atcaccaggtgtcttattgaatgcagagatgagtacaagtacaatgtagaagcagttgaa
cttctgataagaaaccatcttgtgaatatgcaacagtatgacttacatctggcacagtca
atggagaatggaatgcactacatggcagttgcttttgcaatgcagttggtgaagctgctg
ctggtagatgaacgtagtgtgagccatgtcacagaggctgacctcttccacaccatcgag
actttaatgaggatttgtgcgcactcacgggccaatgcacctgaaggacttccacagctg
atggatgtcgttcgatctaactatgaagcaatgattgatcgagcccacggtggaccaaac
ttcatgatgcactctgggatttcccaggcttcagagtacgatgatcccccaggcctgagg
gagaaagcagagtacctactgagagagtgggttaatttgtaccactcagctgctgctggg
cgggacagtaccaaagccttttctgcatttgttggccagatgcaccagcagggtatcctg
aagactgatgacttgatcacaaggttcttccggctgtgtaccgaaatgtgtgttgagata
agctaccgggcacaggctgaacagcagcacaacccagcagccagtgcagcaatcatccgt
gcaaagtgttaccataacctggatgcatttgtgcggctcatagctcttctggtcaaacac
tctggagaagcaacaaacaccgttactaaaatcaacctcctcaacaaggtgctaggaatt
gtcgttggagtgttgatccaggaccatgatgtgcgtcagactgaattccagcagctgcca
taccaccgcattttcatcatgctgctgctggagctcaatgctcctgaacatgtgttagag
accatcaactttcaaacactgactgccttctgcaatactttccacatcttgagacctacc
aaagctccaggctttgtgtatgcctggctggaactcatctcccatcgcatttttattgca
cggatgcttgcgcatacaccacagcagaagggctggccgatgtatgcacagttgctgatt
gatctcttcaagtatttggccccattcttgagaaatgttgagctcaacaaacctatgcaa
atcctgtacaagggaacccttcgagtccttctggtcctgctgcatgacttcccagagttt
ctgtgcgactaccattatggcttctgtgatgtcatcccacccaactgcattcaactccgc
aacctcatactcagtgcctttccacgcaacatgaggctccctgatcctttcacacccaat
ctcaaggtggatatgctgagtgagatcaatattgctcctcgaatcctcaccaacttcaca
ggcgtcatgccttcgcagttcaagaaggatttggattcgtatttgaaaacacgctcacca
gtcactttcttgtctgagctgcgcagcaacctgcaggtgtccaatgagccaggaaaccgc
tacaacatccagttgataaatgcgttggtgttgtatgtgggcactcaggcgattgctcac
atccacaacaagggcagcactccctccatgagcacaatcactcactctgcacacatggac
atctttcagaacctggctgtggacctggatacagagggccgatacttgttcctgaatgca
attgctaatcagctgcgctaccccaacagccacactcactatttcagctgcaccatgctt
tatctcttcgctgaagcaaataccgaagcaattcaggagcaaattaccagggttctgctt
gagaggctgattgtgaacagaccccatccatggggtcttctcatcaccttcattgaactg
atcaagaaccctgccttcaagttctggagccacgactttgtgcactgtgcccctgagatt
gaaaagctgttccagtcagtagcccagtgctgcatgggacagaagcaggctcagcaagtg
atggagggaactggtgccagctag
DBGET
integrated database retrieval system
