Eucyclogobius newberryi (tidewater goby): 140354803
Help
Entry
140354803 CDS
T10929
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
140354803 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eny03021
]
140354803 (polr1a)
Enzymes [BR:
eny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
140354803 (polr1a)
Transcription machinery [BR:
eny03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
140354803 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF4633
Motif
Other DBs
NCBI-GeneID:
140354803
NCBI-ProteinID:
XP_072296134
LinkDB
All DBs
Position
Unknown
AA seq
1705 aa
AA seq
DB search
MMFEKDTPWRRLEGMSFGLYSADELRRLSVKLITNSRFLDNVGNMAMNSLYDLAMGPADN
KEVCATCCQDFNNCPGHFGHVELPLPVYNPLFFDKLYLLIRGSCLKCHCMTYPRAAIHLL
IQQLHLLDHGAMQEVHELEQVLSQVVVDKEKVSGDDIERALKEFTDRVVKETPVTCKPTK
HLVQMKNSLINDFWKNHMKTRTCSNCRRAKCSVRREHNSKLIISMSSQDQTDDLLAGRRS
YLTASTAQEHVVQLWKKEGFFLNRLFSGMDFDSKENNFNPDLFFLDLLLVPPCRYRPINR
MGEQMFTNGQTVNMQAVMKDCEGIRKLLALIAGKKMQEEVTPEQVEQMEQMEQVQQMEQV
QQMEQVQQMEQVQQMEPADQSFVMSLPGQTLTDKLYNLWSRLQSHVNIVFDSDMDKLMSE
KYPGIKQILEKKDGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQTV
TPWNVKELRQAVLNGPNKHPGATMIIYEDGRKVRLSPTDVSQREAEAKQLLTPSPRTHKM
PMKIVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELARAEAYTLVSTNQQYLVPKDGKPLAGLIQDHMVSGTQMTIRGCFFSRDQY
TELVYRGLTDKQGRVTLLPPAILKPHPLWTGKQVVSTLLLNVIPKAAVPLNLVGRSKIPS
KAWIQEPPRACPRYKPETMCDSQVVICDGELLVGVLDKAHYGSSAYGLVHCCYELYGGET
SGKLLSCLARLFTAYLQLYRGFTMGVEDILVRPGANKQRRKIIKQSLKIGTKALKAAFNL
ASDVDAAEARSRWQDAHLNPDQKDFSLADHKFKEVANQINNDINKVCMPVGLHRSFPDNN
LQLMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCYQPYDPSPGAGGFVSG
RFLTGIKPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPRQFPFVEENYEVIKKSQRLDHVLSRLDPDAARRHFTAIQ
RWKSKRETANPRQGAFLVFSQKKLAKLKAATARGENVNGRDLPTLQLLEQWRALDPRSRA
KFGRKGTRCPEPALGVLRPDVSFGSVSETFNDVTEKYLSGRGGALDEPLKDSLRQLLQYK
WQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNI
KTPMMSVPVLGTKKAQKKAKILRKMLTRVCLSELLHRVDVVESLRLAGVRDKMRTYKVTF
HFLSPERYRDDKLLTPHQILQYMESKFFRLLTDAVKKHSAKLALISVETRKAKLRDKDND
GEGPSASPALDEADDEQQEIVDDRENEGDTDATDAKRKDKQEEEVDYDSDEEAVEDAEDA
DDEDETQSMDEAADEDETPAAPVVTRLKKRSKERRGPAPEVMDDMRVNMVLASCPSIEGY
RYDHAHELWCEVDLALPVTKVHFDLTSVLSSLAKSAVIMETKGLTRCLLSEVTRKNGEKE
TVLNTEGINMHELFKYCDILDLKRLYCNEVHSMSATYGIEVGLKVVEKEIKDVFAVYGIE
VDPRHLSLVADYMCFEGVYKPLNRHSMLSNPSPLQQMTFETSFKFLRQASMLGARDQLES
PSACIVTGKVVKGGTGIFELKQPLQ
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcgagaaggatacgccgtggcgccgtctggagggcatgtcgtttggcctttat
tcggccgatgaacttaggcgcctgagcgtgaagctgatcacaaactccaggttcctcgac
aacgtggggaacatggcgatgaacagcctctacgacctggcgatgggaccggccgacaac
aaagaggtttgcgcgacgtgttgtcaggactttaacaattgtcccggtcacttcggtcac
gtggagctgcctctgccggtgtacaacccgctgttcttcgacaaactgtacctcctgatc
cgcggctcgtgtctgaagtgtcactgtatgacgtatccccgagcggccattcacctcctc
atccaacagctccacctgctggaccacggggcgatgcaggaggtgcacgagctcgaacaa
gtcctctcacaggtcgtggttgacaaagagaaagtctccggcgacgacatcgagcgagct
ttgaaagagttcactgatcgcgtcgtcaaggagacaccggtcacctgcaaaccgaccaaa
catctcgtgcaaatgaagaacagtttgataaacgacttctggaaaaaccacatgaagacg
aggacatgttccaactgcaggcgtgcgaagtgttcagtgcgtcgtgagcacaacagcaaa
ctcatcatcagcatgtcttcacaggaccagaccgatgacctgctggctggacggaggtcg
tacttgacggcgagcacagcccaagaacacgtggtgcagctgtggaaaaaagaagggttt
ttcctgaaccgcctgttctccgggatggactttgactcaaaagagaacaactttaacccc
gacctgttcttcctggacctgctcctcgtccccccctgcagatatcgccccattaaccgt
atgggggaacagatgttcacgaatggacagacggtgaacatgcaggcggtgatgaaggac
tgcgagggcatcaggaaactgctcgctctgatcgccgggaagaaaatgcaggaggaagtg
actcctgagcaggtggagcagatggagcagatggagcaggtgcagcagatggagcaggtg
cagcagatggagcaggtgcagcagatggagcaggtgcagcagatggagccggcagatcag
tccttcgttatgtcacttcctggtcagactctcaccgataaactctacaacttgtggagc
cgactccagagtcacgtcaacatcgtgttcgacagcgacatggacaagctcatgtccgag
aagtacccaggaatcaaacagatcctggagaaaaaggacggtctgttcaggaagcacatg
atggggaaacgcgtggacttcgctgcccgatcggtcatctgccccgacatgtacatcggc
accaacgagatcggaatcccaatggtgttcgctactaagctgacctaccctcagaccgtg
accccgtggaacgtgaaagagcttcgccaggcggttctgaacggtccaaacaaacacccg
ggcgccaccatgatcatctacgaggacggccgtaaagtcagactgtctccgactgacgtt
agccagagagaagccgaggccaaacagctcctgacgccgtctcccagaacgcacaaaatg
cccatgaagatcgtgaatcgccacatcaagaacggagatgtgctgttactgaaccgacag
cccaccctccacagaccctccatacaggcccactgcgcccgcatcctgcccggagagaag
gttttgaggctgcactacgcgaactgcaaagcctacaatgcggacttcgacggcgacgag
atgaacgctcacttcccccagagcgagctggcccgagccgaggcctacacgctggtcagc
accaaccagcagtacctcgtcccaaaggacgggaagcctctggccggtctgatccaggac
cacatggtgtccgggacccagatgaccatccgaggctgtttcttcagcagagaccagtac
acggagctggtctacagaggcctcacggacaagcagggcagagtgacgctcctcccgccg
gccattctcaagccacacccgctctggaccgggaaacaggtggtgtccacgctgctcctg
aacgtcatcccgaaggcagcggtccctctgaacctggtgggaaggtccaagatcccgagt
aaagcctggatccaggagccgcccagagcgtgtccccggtacaagccggagacgatgtgc
gactcgcaggtggtgatctgtgacggcgagctactggtcggggtcctggataaggctcat
tacggctcctcggcgtacggcctggtgcactgctgctacgagctttacggaggagaaacc
agcgggaagctgctcagctgtttggcccgactcttcaccgcatacctccagctctacaga
ggcttcaccatgggcgtggaggacattttggtgagaccgggcgccaacaagcagcggagg
aagatcatcaagcagtcgctcaagattggaaccaaagcgctgaaggcggcctttaacctt
gcgtctgacgtggacgcggcggaggctcggagccggtggcaggacgctcacctgaacccg
gaccagaaggacttcagtttggccgatcacaagtttaaagaagtggccaaccagatcaac
aacgacatcaacaaggtctgcatgccggtcggtctccatcgctctttccccgacaacaac
ctccagctcatggtccagtcgggagccaaaggttccacggtcaacaccatgcagatctcg
tgtcttttgggtcagatcgagctggaggggcggcggcctcccctgatgccctctgggaaa
tccctgccttgttatcagccgtacgacccttcgcccggcgccgggggcttcgtgtctggg
cgcttcctcacgggcatcaaaccacaggagttcttcttccattgtatggccgggagagaa
ggcctcgtcgacaccgccgtgaaaacctccagatctggatatttacaaagatgtgtgatc
aaacacctggagggtctggtggtgcagtacgacctcacggttcgggacagcgacggctcc
gtggtgcagttcctgtacggagaggacggactcgacatccccaagacacagttcctgcag
cccagacagttcccctttgtcgaggagaactacgaggtcataaagaaatcccagcgtctg
gaccatgtcttgtctcgattggatcctgacgccgcccgacgacacttcacagccattcag
cgatggaaaagcaaacgggaaacggccaatcccagacaaggcgcgttcttggttttctcg
cagaagaaactggccaaactcaaagcagcgacggcgaggggcgaaaacgtcaacggccga
gacctccccactttacagctgttggagcagtggcgcgccctggaccctcggagccgggcc
aagttcggcaggaaaggcacgcgctgtcccgagccggcgctgggcgtgctccgccccgac
gtgagcttcggctcggtgtccgagaccttcaacgacgtgacggagaaatacctgagcggc
cgcggcggcgccctggacgagccgctcaaggacagcctgcgccagctgctgcagtacaaa
tggcagcgtgccctgtgtgacccgggcgaggccgtgggtctgctcgccgcccagtccatc
ggggaaccgtccactcagatgaccctcaacaccttccacttcgccggccgcggagagatg
aacgtcacgctgggaataccgcgactgagggagatcttgttggtcgccagctccaacatt
aagacccccatgatgagcgtcccggtcctgggcaccaaaaaggcccagaagaaggccaag
attctgaggaaaatgctcacgcgcgtctgtctgtccgagcttctgcatagagtggacgtg
gtggagtcgctgcggctcgccggcgttcgcgacaaaatgcggacgtacaaagtcaccttc
cacttcctgtcgcccgagcgttaccgcgacgacaagcttttgaccccgcaccagatcctg
cagtacatggagtccaagtttttccgtctcctcacagacgccgtcaagaagcacagcgct
aaactggccttgatctccgtggaaacgaggaaagcgaagctccgggacaaggacaacgac
ggagaagggccgagcgcctctccggcgttggacgaggccgatgacgagcagcaggagatc
gtggacgacagagaaaatgaaggcgacacggacgccacggacgccaagcgcaaagacaag
caggaggaggaggtcgactacgacagcgacgaggaggctgtggaggacgcagaagacgcc
gacgacgaggatgagactcaatcgatggacgaggcggcggacgaagacgagacccccgcg
gcgccggtcgtgaccagactgaagaagcgcagtaaagagcggcgagggccggcgccggag
gtcatggacgacatgcgggtgaacatggtgctggcgtcgtgtccctccatagaaggttac
agatacgaccacgcccacgagctctggtgtgaggtggacctggcgttgccggtgaccaag
gtgcactttgacctcaccagcgtcctgtcatcgctggccaaaagcgccgtcatcatggag
acaaagggcctgacccgctgcctcctgagcgaggtcaccaggaagaacggagagaaggag
acggtgctgaacacggagggaatcaacatgcacgagctgttcaagtactgcgacattctg
gacctgaagcgtctttactgtaacgaggtccattcgatgtccgccacgtacggcatcgag
gtgggtctgaaggtcgtcgagaaggagatcaaggacgtgttcgccgtctacggcatcgag
gttgacccgcggcacctgtcgctggtggcagactacatgtgcttcgagggcgtttacaaa
cctctgaacagacactccatgctgtccaacccgtctccgctgcagcagatgaccttcgag
accagcttcaagttccttcgacaggcctccatgctcggcgctcgcgatcagctggagtcg
ccgtccgcctgcatcgtcacggggaaagtggtgaaaggaggaaccgggatctttgaactc
aaacagcctcttcagtga
DBGET
integrated database retrieval system
