Eucyclogobius newberryi (tidewater goby): 140375890
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Entry
140375890 CDS
T10929
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
eny Eucyclogobius newberryi (tidewater goby)
Pathway
eny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140375890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eny03019
]
140375890
Messenger RNA biogenesis [BR:
eny03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140375890
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140375890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
Motif
Other DBs
NCBI-GeneID:
140375890
NCBI-ProteinID:
XP_072318036
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MGSLNLGGTAPSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSSANPSTPFGGIGSLSSQL
PGMDSGPLGSGIGSGIGSSLGMPTVGTDPFSTRKMSTPGLNPPTFQQTDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTVKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQ
VQAQTQPQPPGAPKVPQPGQTSTLVTTTTTTTTVAKTTTITRPTPSSFKKDVPPSINTTN
IDTLLVATDQNERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYL
VMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLLKN
LGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRP
QNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLKNLEE
QLSAPKKEAKPPEELLPVSSTGDFVPFAAPPSTPAATTTPCTTTGPPTPQFSYHDINVYA
LAGLSPHININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRK
DFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFAAGLRAPTPQQRE
MMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVL
TYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWAT
DDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKA
VEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNV
EAVELLIRNHLVNMQQYDLHLAQSMENGMHYMAVAFAMQLVKLLLVDERSVSHVTEADLF
HTIETLMRICAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDP
PGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEM
CVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNK
VLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHI
LRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELN
KPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDP
FTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNE
PGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYL
FLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgggatccctcaacttgggtggcacagccccatctcacactcagagcatgcaaggtttc
cccacctcattaagttcagcatttagtaacccccagtctcctgcaaaggcgttcccacca
ctgtccagtgccaacccaagtaccccatttggtggtattggcagtctgtcatcacagctt
cctggcatggattctggtcctctgggctcaggcattggctctggcataggctccagtttg
gggatgccaactgttggcactgatcccttcagtaccagaaagatgagcacaccaggcctg
aatccaccaacgtttcagcagactgacctttctcaggtgtggcctgaggcaaaccagcac
tttagtaaggaaatagacgatgaagcaaatagctacttccagcgcatctacaaccaccca
cctcaccctactatgtctgtggatgaggtgttggagatgttgcaaagattcaaagattca
accgtcaaacgagaacgagaagtgttcaattgtatgctacgtaatttgtttgaggaatac
cgcttcttcccgcagtacccagacaaggaattacacataactgcttgtctttttggtggc
attattgagaaggggctggtcacttacatggccctggggttggcactgcgatatgttctt
gaagccttaaggaaaccttttggatcaaaaatgtattattttggaattgcagctttagat
cggttcaaaaacagattaaaggactatcctcaatattgtcaacatctagcatctattgca
cacttcttgcaattcccccatcatttacaagagtatatcgagtatggtcaacagtcacgg
gaccctccagtgaagatgcagggctccatcacgactcctggcagtttggccctcgcccag
gtgcaagcgcagactcagccccaaccacctggggcccccaaagttcctcaacctggccaa
actagcacactggttactactaccaccactaccaccacagtagccaagaccacaaccatc
acaagaccaacgcctagcagcttcaaaaaagatgttcctccctccataaacactacaaac
attgacaccctccttgtggccactgaccagaatgaaaggattgtagaacctccagagaat
atacaggaaaagattgcatttattttcaacaacctttcacagtcgaacatgacccaaaag
gttgaggagttaaaggagacggtaaaggaagagtttatgccctgggtttcacagtatctg
gtgatgaagcgggtcagtattgagcccaattttcacagcctttactcaaactttcttgac
acactgaagaacccagagtttgtgaagatggttcttactgaaacctatcggaatataaag
gttcttttgacttctgataaggcagcggccaatttttcagaccgctcactgctcaagaac
ttgggtcactggctaggaatgattacgttggccaaaaacaaacccatactctatactgat
ttggaactaaaatctcttctactggaagcctatgtgaaaggccaacaggagttgctttat
gtggttccatttgtggctaaagttttggaatccagtcttagaagtatggtttttaggccc
caaaatccctggaccatggccatcatgaatgtgcttgctgagctgcaccaggaacatgat
ctcaagctaaacctcaaatttgaaattgaagttctgtgtaagaatctgtcattagacatc
aatgatctaaagccaggaaacttgctgaaagataaagacaaactaaagaatttggaggaa
caactttctgcaccaaagaaggaggcaaaacctccagaggagctgctccctgtatcaagc
acaggggactttgttccatttgcagcgccaccctcaaccccagctgccaccaccacaccc
tgcacaaccacggggcctccaacaccgcagttcagttaccatgacatcaatgtgtatgct
ttggctggcttgtccccacacataaacataaatgccaatattcccctcttacaagcccac
cctcagctcaagcagtgtgttcgtcagtcagtcgaacgcgctgtccaggagttggttcat
cccgtggttgataggtccatcaaaatagccatgacaacctgtgagcagatcatcaggaag
gattttgccttggattctgaggagtcccgcatgcgtgtagccgctcaccacatgatgaga
aacctgactgcaggcatggccatgataacctgccgcgagcctttgctcatgagcattgca
accaacctaaagaacaactttgctgctggactcagggcaccaacccctcaacagagagaa
atgatggaagaagctgctgcaaggattgctcaggacaactgtgaactagcctgttgcttc
attcaaaaaaccgctgtggagaaagctggccctgagatggacaagagactagccacggag
tttgagctaaggaaacatgcgcgccaagaagggcggcgctactgtgatcctgttgtttta
acctaccaggctgaacgcatgcctgaacagatcagactcaaggttggtggagtggatccc
aaacaactggctgtttatgaagagtttgccaggaatgttccaggtttcttacccagtaat
gatctctctcagcccactggcttcttggctcagccaatgaagcaacaggcatgggctaca
gacgatgttgctcaaatctatgataagtgcatggcagatttggagcagcatcttcatgcc
atccctccagcactcgctatgaacccattaactcaggcactgcgcagcttgcttgaggct
gtagcgttggcaagaaactcaagagatggcattgctgcacttggcctccttcagaaggct
gtggagggacttttagacgctaccagtggtgcagacgctgatttattgctgcgctacaga
gagtgccacctgctcgtgcttaaggccctgcaggacggacgtgcttatggaccacagtgg
tgcaacaagcagatcaccaggtgtcttattgaatgcagagatgagtacaagtacaatgta
gaagcagttgaacttctgataagaaaccatcttgtgaatatgcaacagtatgacttacat
ctggcacagtcaatggagaatggaatgcactacatggcagttgcttttgcaatgcagttg
gtgaagctgctgctggtagatgaacgtagtgtgagccatgtcacagaggctgacctcttc
cacaccatcgagactttaatgaggatttgtgcgcactcacgggccaatgcacctgaagga
cttccacagctgatggatgtcgttcgatctaactatgaagcaatgattgatcgagcccac
ggtggaccaaacttcatgatgcactctgggatttcccaggcttcagagtacgatgatccc
ccaggcctgagggagaaagcagagtacctactgagagagtgggttaatttgtaccactca
gctgctgctgggcgggacagtaccaaagccttttctgcatttgttggccagatgcaccag
cagggtatcctgaagactgatgacttgatcacaaggttcttccggctgtgtaccgaaatg
tgtgttgagataagctaccgggcacaggctgaacagcagcacaacccagcagccagtgca
gcaatcatccgtgcaaagtgttaccataacctggatgcatttgtgcggctcatagctctt
ctggtcaaacactctggagaagcaacaaacaccgttactaaaatcaacctcctcaacaag
gtgctaggaattgtcgttggagtgttgatccaggaccatgatgtgcgtcagactgaattc
cagcagctgccataccaccgcattttcatcatgctgctgctggagctcaatgctcctgaa
catgtgttagagaccatcaactttcaaacactgactgccttctgcaatactttccacatc
ttgagacctaccaaagctccaggctttgtgtatgcctggctggaactcatctcccatcgc
atttttattgcacggatgcttgcgcatacaccacagcagaagggctggccgatgtatgca
cagttgctgattgatctcttcaagtatttggccccattcttgagaaatgttgagctcaac
aaacctatgcaaatcctgtacaagggaacccttcgagtccttctggtcctgctgcatgac
ttcccagagtttctgtgcgactaccattatggcttctgtgatgtcatcccacccaactgc
attcaactccgcaacctcatactcagtgcctttccacgcaacatgaggctccctgatcct
ttcacacccaatctcaaggtggatatgctgagtgagatcaatattgctcctcgaatcctc
accaacttcacaggcgtcatgccttcgcagttcaagaaggatttggattcgtatttgaaa
acacgctcaccagtcactttcttgtctgagctgcgcagcaacctgcaggtgtccaatgag
ccaggaaaccgctacaacatccagttgataaatgcgttggtgttgtatgtgggcactcag
gcgattgctcacatccacaacaagggcagcactccctccatgagcacaatcactcactct
gcacacatggacatctttcagaacctggctgtggacctggatacagagggccgatacttg
ttcctgaatgcaattgctaatcagctgcgctaccccaacagccacactcactatttcagc
tgcaccatgctttatctcttcgctgaagcaaataccgaagcaattcaggagcaaattacc
agggttctgcttgagaggctgattgtgaacagaccccatccatggggtcttctcatcacc
ttcattgaactgatcaagaaccctgccttcaagttctggagccacgactttgtgcactgt
gcccctgagattgaaaagctgttccagtcagtagcccagtgctgcatgggacagaagcag
gctcagcaagtgatggagggaactggtgccagctag
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integrated database retrieval system
