Endosymbiont of Sipalinus gigas: NARSGI1_01830
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Entry
NARSGI1_01830 CDS
T06000
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eof
Endosymbiont of Sipalinus gigas
Pathway
eof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NARSGI1_01830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eof03019
]
NARSGI1_01830 (rne)
03009 Ribosome biogenesis [BR:
eof03009
]
NARSGI1_01830 (rne)
Enzymes [BR:
eof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NARSGI1_01830 (rne)
Messenger RNA biogenesis [BR:
eof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NARSGI1_01830 (rne)
Ribosome biogenesis [BR:
eof03009
]
Prokaryotic type
rRNA processing factors
NARSGI1_01830 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBA85320
LinkDB
All DBs
Position
complement(160947..162656)
Genome browser
AA seq
569 aa
AA seq
DB search
MRKMLVNARHKEELRVAIIDNENLLYDLYIENMNYEQKKSNIYKGKIVKIEPSLNAAFVD
YGCEKNGFLSIKEINDSFFIKKKLDIKVGIKDILKENQEIMVQVNKEERGKKGAYLSTFI
SLAGSYLILMPNNPNVLGISRRIKKELKFKLKDLISKLIIPENMGIIIRTSGINKSLDDL
QTDLNMKLDHWNIISKIYKEKNNPSIIYNENNIVIKIFRDYLNNDIDEIIIDELEILELS
KEYLKFLGRNDFIKKLKLHVNNIPLFYKFNIESQIKTIFKKKVNLPSGGSIIIDSTEALT
SIDINSSKYTKGINIEETALNTNIEAAKEIVRQIKFRDLGGLIVIDFIDMLKEKNKKDIE
NLINKLVLEDRSKVQVGVISKFGLLELSRQRINNSINEFNNYICPRCEGIGYIKTNKNLT
IYILRIIEEKILNKDVKEIHIIVPVIIGTYLLNEKRNIINELEYKNLKKIVIIPSEQIKT
PNYTINTFNNINNTIDYSLFKINKKKIDICEYINKNNSKLNNKYINFDIYKKYNNKKLYN
IKLFYNNIINKINIIKNFFINKIINKKKE
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaatgttagttaatgctagacataaagaagaattaagagttgctataatagat
aatgaaaatttattatatgatttatatatagaaaatatgaattatgaacaaaaaaaatct
aatatatataaaggtaaaatagtaaaaatagaacctagtctaaatgcagcttttgtagat
tatggttgtgaaaaaaatggatttctttcaataaaagaaataaatgatagtttttttata
aaaaaaaaattagatataaaagttggtataaaagatatattaaaagaaaatcaagaaata
atggtacaagtaaataaagaagaaagaggtaaaaaaggggcttatttaagtacgtttata
agtttagctggatcttatttaatattaatgccaaataatcctaatgtattaggaatatct
agaagaataaaaaaagaattaaaatttaaattaaaagatttaatttcaaaattaataata
cctgaaaatatgggtataataataagaacttctgggattaataaatcattagatgattta
caaactgatttaaatatgaaattagatcattggaatataatcagcaaaatatataaagaa
aaaaataatccatctattatatataatgaaaataatatagttattaaaatatttagagat
tatttaaataatgatatagatgaaattataatagatgaattagaaatattagaattatct
aaggaatatttaaaatttcttggaagaaatgattttataaaaaaattaaaattacatgta
aataatattccattattttataaatttaatatagaatctcaaataaaaactatatttaag
aaaaaagtaaatttaccatccggcggatcaataataatagattcaacagaagcattaaca
tctatagatataaattcttctaaatacactaaaggtataaatatagaagaaacagcatta
aatacaaatatagaagctgcaaaagaaatagttcgtcaaataaaatttagagatttagga
ggattaatagtaatagattttatagatatgcttaaagaaaaaaataagaaagatattgaa
aatttaataaataaattagttttagaagatagatctaaagtacaagtgggtgtgatatca
aaatttggtttattagaattgtctagacaaagaataaataattctataaatgaatttaat
aattatatatgtcctagatgtgaagggattggttatataaaaactaataaaaatttaaca
atatatatattaagaattatagaagaaaaaatacttaataaagatgtaaaagaaatacat
ataatagttcctgttataataggaacttatttattaaatgaaaaaagaaatattataaat
gaattagaatataaaaatttaaaaaaaatagtaataataccaagcgaacaaataaaaacg
cctaattatactataaatacttttaataatattaataacacaatagactattcattattt
aaaattaataaaaaaaaaatagatatatgtgaatatataaataaaaataatagcaaatta
aacaataaatatataaattttgatatatataaaaaatacaataataaaaaattatataat
ataaaattattttataataatattattaataaaattaatataataaaaaacttttttatt
aataaaattataaataaaaagaaggagtag
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