KEGG   Escherichia coli O111 H- 11128 (EHEC): ECO111_1476
Entry
ECO111_1476       CDS       T01097                                 
Symbol
ycfD
Name
(GenBank) conserved predicted protein
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
eoi  Escherichia coli O111:H- 11128 (EHEC)
Brite
KEGG Orthology (KO) [BR:eoi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:eoi03009]
    ECO111_1476 (ycfD)
Enzymes [BR:eoi01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     ECO111_1476 (ycfD)
Ribosome biogenesis [BR:eoi03009]
 Prokaryotic type
  ribosomal protein modification factors
   ECO111_1476 (ycfD)
SSDB
Motif
Pfam: JmjC_2 WHD_ROXA Cupin_1 Cupin_2 AraC_binding Tup_N
Other DBs
NCBI-ProteinID: BAI35408
LinkDB
Position
complement(1497169..1498290)
AA seq 373 aa
MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLAMESEVDSRLVSHQDGK
WQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRELPDWRIDDLMISFSVPGG
GVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLLQVDPFEAIIDEELEPGDILY
IPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYVLQRELGGNYYSDPDVPPRAHPA
DVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSRHELDIAPPEPPYQPDEIYDALKQG
EVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALDALASNIALTAENFGDALEDPSFLAML
AALVNSGYWFFEG
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggaataccaactcactcttaactggcccgattttcttgaacgtcactggcagaaacgc
ccggtggtgttaaaacgcggctttaataattttattgacccgatctctccagacgagttg
gcgggtctggcgatggaaagcgaagttgacagtcgactggtcagtcaccaggatggcaaa
tggcaggtcagccacggcccgttcgaaagctacgatcatctcggtgaaaccaactggtca
ttactggtacaggcagtgaaccactggcatgagccgaccgccgcgctgatgcgaccgttc
cgtgaactaccggactggcgtattgatgatctgatgatctctttttctgtaccgggcggc
ggcgtcggtccgcatctcgatcagtacgacgtgtttatcattcagggtaccggtcgtcgt
cgctggcgagtgggcgaaaagctgcaaatgaaacagcactgtccgcacccggatctgtta
caggtcgatccgttcgaagccatcatcgatgaagagctggagcctggcgatattctttat
attccgccaggattcccgcatgaaggctacgcgctggaaaatgcgatgaactattccgtg
ggttttcgcgcgccaaatacgcgggaattaattagcggatttgccgattatgtgctgcaa
cgtgaactgggcggcaactactacagcgatccggatgttccacctcgcgctcatcctgcg
gacgttctgccgcaagagatggataaactgcgtgagatgatgctcgaattgatcaaccag
ccggaacactttaagcaatggtttggcgagtttatatcccagtcacgtcatgaactggat
atcgcgccgccggaaccgccttatcagccagatgaaatctacgatgcgctgaaacaaggt
gaagtgctggtgcgcctgggtggtctgcgcgtattgcgcattggcgacgacgtgtatgcc
aatggtgagaagatcgattccccgcaccgtccggcactggatgcactcgccagcaacatt
gcgctgactgcggagaattttggcgatgcgctggaagatccgtcattcctcgcgatgctc
gcggcgctggtcaatagcgggtattggttcttcgaagggtaa

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