Candidatus Endoriftia persephonae: L0Y14_01735
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Entry
L0Y14_01735 CDS
T08211
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eps
Candidatus Endoriftia persephonae
Pathway
eps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L0Y14_01735 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eps03021
]
L0Y14_01735 (rpoB)
03400 DNA repair and recombination proteins [BR:
eps03400
]
L0Y14_01735 (rpoB)
Enzymes [BR:
eps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L0Y14_01735 (rpoB)
Transcription machinery [BR:
eps03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L0Y14_01735 (rpoB)
DNA repair and recombination proteins [BR:
eps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L0Y14_01735 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
USF87990
UniProt:
A0A9J6ZYP7
LinkDB
All DBs
Position
367281..371357
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRKDFGKRTSILDVPFLLATQIESFRDFLQQGVPLEKRKDVGLHAAFKSV
LPIVSYSGNAVLEYVNYRLGEPVFDVRECQLRGTTYAAPLRVLVRLVIYDKEAPAGSNVV
KDIREQEVYMGEMPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFSA
RVIPYRGSWLDFEFDPKDNVFVRIDRRRKLPATVLLRALGYDTEQILGMFFETDTFSLTK
RTVKVNLVPERLRGETVSFDIKVGDEVIVEAGRRITARHIRQLDKAGVSKLDVTREYMVG
RTLAHNVVDKETGELLADANTEITDEMMDLLVEKGVKKIQTIFTNDLDHGPFISDTLRID
STSNELEAQVEIYRMMRPGEPPTKEAAQNLFNNLFFTAERYDLSAVGRMKFNRRLGREES
VGEGVLSKEDISDVLKELINIRNGNGVVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERA
VKERLTQAESEGLMPQELINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLARERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNKYGFLETPYRKV
VGGKVTDQIDYLSAIEEGRYVIAQASASTDAEGNLTDDLVSSRHQNEFTLSVADKVQYID
VSPKQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAVDSGV
TVVAKRGGEIETVDAARIVVRVNDDETEAGESGVDIYNLTKYTRSNQNTCINQRPLVKVG
NTIARGDVLADGPSTDMGELALGQNLRVAFMPWNGYNFEDSILISERVVEEDRFTSIHIE
ELTCMARDTKLGPEEITGDIPNVGEAALSKLDESGIVYIGAEVKEGDILVGKVTPKGESQ
LTPEEKLLRAIFGEKASDVKDTSLRVSSGVVGTVIDVQVFTRDGVEKDARALSIEEMEMA
SVRKDLDDQLRIMEEDTFQRVERMLLGKIAEGGPNQLKAGAKVTKSYLADLDRDKWLEIR
LRNEEAVAQLEAIAEQIKAQRELFREKFEEKKRKLTSGDDLAPGVLKMVKVYVALKRRIQ
PGDKMAGRHGNKGVISNVVPVEDMPFDEHGEPVDIVLNPLGVPSRMNVGQVLETHLGFAA
KGVGRKIGAMLQAQAKVAELREFLDKVYNTSGKREDLDSLTDEEVVTLCGNLREGVPMAT
PVFDGAHESEIHHMLELGGLPQSGQLTLFDGRTGDAFERQVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTRM
YKNIVDGNHQMEAGMPESFNVLVKEIRSLAINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattctttcaccgagaaaaagcgtatccgcaaagacttcggtaagcgcactagt
attctcgacgtcccgtttctgcttgcgacgcagatcgaatccttccgtgactttctccag
cagggtgtaccgctggaaaagcgtaaggatgttggcttgcatgccgcttttaaatcagta
ttaccgattgtcagttactctggcaatgcagtgctggagtatgtgaactaccgtttgggt
gagccggtcttcgatgtccgcgagtgtcaactgcgcggcaccacctatgctgcccctctt
cgggttctggttcggctggtgatctacgataaggaggcaccggcgggttccaatgtggtc
aaggatatccgcgagcaagaggtctacatgggtgaaatgcccctgatgaccgacacgggc
acctttgtcatcaacggaaccgagcgggttatcgtctcccagttgcatcgttccccgggt
gtcttcttcgaccatgacaagggcaagacccactcctcgggcaagctgctgttttccgcg
cgggtgattccctaccgtggctcctggctcgacttcgagttcgatccaaaggataacgtg
tttgtgcgcatcgatcgccgtcgcaagctgcctgcgactgttctgttgcgcgcgctcggt
tacgataccgagcagatactcgggatgtttttcgagaccgacaccttcagcctgaccaag
cgcacagtgaaagttaatctggtgcccgaacggctgcgcggtgagactgtctccttcgac
atcaaggtgggtgatgaggtcatcgtggaagcggggcgtcgtatcactgcacgtcatatc
cgccagctagataaggctggtgtcagcaagctcgatgtgactcgcgaatacatggtcggg
cgcaccctggcccataatgtggtcgacaaggagacaggtgagctgctcgccgacgccaat
actgagatcaccgatgagatgatggatctgctggttgagaagggcgtgaagaagatccag
accatcttcaccaacgacctcgatcacggccctttcatctccgatactttgcgtattgat
tccaccagtaacgaactggaggcacaggtggagatctaccggatgatgcgtccgggtgag
ccgccgaccaaagaggcggcgcagaatctgttcaataatctctttttcactgccgaacgc
tacgatctctccgcagtaggccgcatgaaatttaaccgtcgcctgggccgcgaggagtcg
gtgggtgaaggcgtgttgtcgaaagaagatatcagcgatgtgctgaaggagctgatcaac
atccgcaacggtaatggtgtggtggatgacattgatcacctcggcaaccgccgtattcgt
tgtgttggcgagatggcggagaaccagtttcgtgttggcctggtgcgcgttgaacgtgca
gtcaaggagcgcctgacccaggcggagtcggaaggcttgatgccgcaggagctgatcaat
gccaagccggtctcggcagcggtcaaagagttcttcggttccagccagctctcccagttt
atggaccagaataacccgctctccgaggtcacccacaaaaggcgtgtctcggcactgggt
ccgggcggcttggcccgcgagcgtgccggcttcgaagttcgcgacgtgcacccgacccac
tacggccgagtctgcccgatcgagaccccggaaggccccaacatcggtttgatcaactcg
ttggcggtctatgcccgaaccaataaatacggttttctcgagaccccttaccgcaaggtg
gtgggcggcaaggtgactgatcagatcgactatctctcggctatcgaagaggggcgttat
gtcatcgctcaggccagcgcatcgaccgatgcagagggcaatctgaccgatgatttggtc
tcttcccgtcatcagaatgagttcaccctctccgttgcggacaaggtgcagtacatcgac
gtctcgcccaagcagatcgtctcggtggcggcctcgatgattccgtttctggagcacgat
gatgccaaccgcgccttgatggggtccaacatgcagcgccaggcggtgccgaccctgcgt
gcagaaaagcccttggtgggtaccggtatggagcgcactgtggcggttgattccggtgtg
accgtggtggccaagcgtggcggtgagattgagactgtcgatgcagcgcgcatcgtggtg
cgggtcaatgatgacgagactgaggcgggtgagtcgggtgtcgacatttacaaccttacc
aagtacacccgctccaaccagaacacctgcatcaaccaacggccattggtgaaagtgggc
aacacgatcgcccgcggtgacgtgttggccgacggcccctccaccgacatgggcgagctg
gctctgggccagaacctgcgcgtcgccttcatgccctggaacggctacaacttcgaggac
tcgatcttgatctccgagcgggttgtcgaagaggatcgctttacctcgatccatattgaa
gagctcacctgcatggcccgcgacaccaaactgggcccggaggagatcactggtgatatc
cccaatgtgggcgaggcggcactctccaagctggatgagtcgggcatcgtctacatcggc
gccgaggtgaaagagggtgacatcctggtcggcaaggtcacgcccaagggcgagagccag
ctgaccccggaagagaagctgttgcgggcgatctttggcgagaaggcctcagacgtgaag
gacacctccctgcgcgtctcttccggcgtggttggtacggttatcgatgtgcaggtcttc
acccgtgacggagtggagaaggacgcccgcgccctgtctatcgaagagatggaaatggcg
agtgtgcgcaaggatcttgacgaccagctgcgtatcatggaggaggataccttccagcgt
gttgagcggatgctgcttggcaagatcgccgagggtggcccgaaccagctcaaggcgggg
gccaaggtcaccaagtcctacctcgctgatctggatcgcgataagtggttggagatccgt
ctgcgcaatgaagaggcggtggcgcagcttgaagcgatcgcagaacagatcaaggcgcag
cgtgagctgttccgtgaaaaattcgaggagaagaagcgcaagctcacttccggcgatgat
ctcgctcccggcgtgctgaagatggtcaaggtctatgtggcactgaagcgccgcattcag
cccggtgacaagatggcggggcgccatggtaacaagggtgttatctctaacgtggtgccg
gtggaggatatgccgttcgatgagcacggcgagccggtcgatatcgtgctcaatccgctg
ggtgtgccctcgcgcatgaacgttggtcaggtgctggagacccatctcggcttcgccgcc
aaaggggtcgggcgcaagatcggcgcgatgctgcaggcccaggcgaaggtcgccgagctg
cgtgagttcctcgataaggtctacaacaccagcggcaagcgtgaagatctcgactccctc
accgatgaagaggtggtgacgctatgtggcaacctccgcgaaggcgtgccgatggccaca
ccggtcttcgatggtgcccacgagtctgagatccaccacatgctggagctgggcggactg
ccgcagagcggtcagctgaccctgttcgatggtcgtaccggcgacgccttcgagcgtcag
gtcacggttggttacatgtacatgctgaagctcaaccatctggtggacgacaagatgcat
gcccgctccactggtccctacagcctggttactcagcagccgctgggtggtaaggcgcag
ttcggtggtcagcgcttcggtgagatggaggtctgggcgttggaagcctatggcgccgcc
tacaccctgcaagagatgctcacggtcaagtccgacgacgtcaatggccgtacccgcatg
tataagaatattgtcgacggcaatcatcagatggaagcgggaatgccggaatcgttcaat
gtgttggtcaaggagatccgctccctcgccattaacattgaactggaacaggactaa
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integrated database retrieval system
