Erwinia pyrifoliae Ep1/96: EpC_02480
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Entry
EpC_02480 CDS
T01000
Symbol
rpoB
Name
(GenBank) similar to bifunctional DNA-directed RNA polymerase subunit beta-beta\'
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
epy
Erwinia pyrifoliae Ep1/96
Pathway
epy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
epy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EpC_02480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
epy03021
]
EpC_02480 (rpoB)
03400 DNA repair and recombination proteins [BR:
epy03400
]
EpC_02480 (rpoB)
Enzymes [BR:
epy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EpC_02480 (rpoB)
Transcription machinery [BR:
epy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EpC_02480 (rpoB)
DNA repair and recombination proteins [BR:
epy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EpC_02480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CAX54006
LinkDB
All DBs
Position
289706..293734
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVYQIRDNKLQME
LVPERLRGETASFDIESNGTVYVEKGRRITARHIRQLEKDAVAHIEVPVEYIAGKVVAKD
YIDESTGELLIAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEIHYLSAIEEGNYVIAQANTNLDDEGHFVDDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRINYLLVSGGIEAEKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEDVSR
LREFIQRAYDLGTDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggaaaacgtccacaa
gttctggacattccttatctcctttctatccagcttgactcgttccagaagttcatcgag
caagatccggaaggtcaacatggactggaagcggcattccgttccgtattcccgatccaa
agctatagcggtaattctgagctgcagtacgtcagctaccgtttaggcgaacctgtattt
gatgttaaagagtgtcagattcgtggcgtcacgttctctgcccctctgcgcgttaagctg
cgcctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtatacatgggtgaaattccactcatgaccgataacggtacctttgtcatcaatggt
acagaacgcgttatcgtttctcagctgcatcgtagtcctggtgtgttcttcgacagcgat
aagggtaaaacccactcatcgggtaaagtgctttataacgcacgtatcatcccttaccgt
ggttcatggttggacttcgagttcgacccgaaagacaacctgttcgtccgtattgaccgt
cgccgcaaactgcctgcgaccatcattctgcgcgcgctgaattacaccactgagcaaatc
ctcgatctgttcttcgaaaaagtggtttaccaaattcgcgacaacaagctgcagatggaa
ctggttccggagcgcctgcgtggtgaaactgcgtcatttgacattgagtcgaacggcacc
gtttacgtcgaaaaaggtcgtcgtattaccgcgcgtcatattcgccagctggaaaaagat
gctgttgctcatatcgaagttccggttgagtacatcgcaggtaaagttgttgctaaagac
tatatcgacgagagcaccggtgagctgctgattgcagcaaacatggagctgtcgctggat
ctgctggccaaactgagccagtcaggccacaagcgcatcgaaacgctgttcaccaatgac
ctggatcacggcccgtacatctctgaaaccgtacgcgtcgacccaaccagcgatcgcctg
agcgcactggtcgagatctaccgcatgatgcgtcctggtgaaccaccaacgcgtgaagcg
gctgaaaacctgtttgagaacctgttcttctctgaagaccgctacgatctgtctgcggtg
ggtcgtatgaagttcaaccgttctctgctgcgtgacgagatcgaaggttccggcatcctg
agcaaagacgacatcattcaggtgatgaagaagctcatcggtatccgtaacggtattggc
gaagtggatgatatcgatcacctcggcaaccgtcgtatccgttccgttggcgaaatggcc
gagaaccagttccgtgttggcttagtgcgcgtagagcgtgcggtgaaagagcgtctgtct
ttgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccaatttctgcg
gcagtgaaagagttcttcggttccagccagctgtcacagtttatggaccagaacaacccg
ttgtctgagattacgcacaaacgtcgtatctctgcactcggcccgggcggtctgacgcgt
gagcgtgcaggcttcgaagtgcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtctgtgtatgcacag
accaacgagtacggtttcctggaaaccccataccgccgcgtgcgcgatggcgtggtgacc
gacgaaattcattacctctctgccattgaagagggtaactacgttatcgctcaggcaaac
accaacctcgacgacgaaggccacttcgtagacgacctggtgacctgccgtagcaaaggc
gaatcgagcctgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcgtcactgatcccgttcctggaacacgatgacgccaaccgcgcattg
atgggtgcaaacatgcaacgtcaggcggtacctactctgcgtgctgataagccgctggta
ggaaccggtatggaacgcgcggtagcggtcgactccggcgtcactgccgtagcgaaacgt
ggtggtaccgttcagtacgttgatgcatcgcgtatcgttattaaagttaacgaagacgaa
atgtacccgggcgaagccggtatcgacatttacaatctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtcaacctgggtgaaccgattgaacgcggt
gacgtgctggctgatggtccttcaaccgaccttggcgaactggcactgggtcagaatatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcttagtctccgag
cgcgtggtacaggaagatcgctttaccactatccacattcaggaactggcctgcgtgtcg
cgtgacaccaagctggggccggaagagatcaccgctgatatcccgaacgtgggtgaagcc
gcgctctccaaactggatgagtccggtatcgtctatatcggtgctgaagtaaccggtggt
gacattctggtcggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgctattttcggtgagaaagcgtctgacgttaaggactcttctctgcgtgta
ccgaacggcgtttcaggtaccgttatcgacgttcaggtcttcacccgtgacggtgtggaa
aaagacaaacgcgcgctggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
tctgaagaattgcagatcctcgaagctggcctgttcagccgtatcaactacctgctggtt
tcaggcggtattgaagcggaaaaactggacaagctgccacgcgagcgctggctggaactg
ggcctgaccgatgaagataagcaaaaccagctggaacagctggccgagcagtacgatgag
ctgaagcacgagtttgagaaaaaacttgatgccaagcgccgcaaaatcactcagggcgat
gacctggcaccaggcgtgctgaaaatcgttaaagtgtatctggcggttaaacgtcagatt
cagcctggtgacaaaatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacatcggtcagatcctcgaaacccacctgggtatggct
gctaagggcatcggcgagaaaatcaacgccatgcttaagaagcaggaagacgtgtccagg
ctgcgcgagtttattcagcgtgcttacgatctgggtaccgacgtgcgccagaaagttgac
ctgaacaccttcactgacgacgaagtgctgcgtctggcagaaaacctgaaaaaaggtatg
ccaatcgccactccggtgtttgatggtgcgaaagagagcgaaatcaaagagctgttacag
cttggcggcctgccttcttccggtcagatcaccctgttcgatggtcgtaccggtgagcag
ttcgaacgccaggttaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaaaatgcatgcacgttctaccggttcttacagccttgttactcagcagccgttgggt
ggtaaagcgcagttcggtggtcagcgcttcggtgagatggaagtatgggcactggaagca
tacggtgccgcgtataccctgcaggaaatgttgaccgtgaagtctgatgacgtcaatggc
cgtacgaagatgtataaaaacatcgtcgacggtaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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