Thomasclavelia ramosa: EYR00_14080
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Entry
EYR00_14080 CDS
T06753
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
erm
Thomasclavelia ramosa
Pathway
erm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EYR00_14080 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erm03021
]
EYR00_14080 (rpoB)
03400 DNA repair and recombination proteins [BR:
erm03400
]
EYR00_14080 (rpoB)
Enzymes [BR:
erm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EYR00_14080 (rpoB)
Transcription machinery [BR:
erm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EYR00_14080 (rpoB)
DNA repair and recombination proteins [BR:
erm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EYR00_14080 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QMW75774
LinkDB
All DBs
Position
complement(2940330..2944001)
Genome browser
AA seq
1223 aa
AA seq
DB search
MENKITEAKSKITRRNYSRISGSLELPNLVEIQTNSYKWFKEVGIKEVFEDIYPITNFNE
TLSLEFVDCTFDEAKYSVEESKDRDANYAAPIRASLRLVNSGTGEIKEQEVFMGDFPLMT
DSGTFIINGAERVIVSQLVRSPGAYFADALDKSGKTVFNGSIIPSRGTWLEFETDAKDVL
NVRIDRNRKMPGTVLLRALGLSSNDEIIDVFGEHEYIINTLAKDNTTNTEEALIEIYNKL
RPGEPATLEGANNLLYTRFFDCKRYDLAKAGRFKFRKKLSLLDRIAGRILAEDLVDVDGN
VVYPEGTVVTQEVSDTIKPIFEAGAHTRELDTNPRLESNGVIQVLDVYVDDTKTKKMRVI
GTDLSLDSKFVTISDMMAAYSYMFNLVDIYDALDLTAEDRVNLMARIGLLDDIDHLGNRR
VRSVGELIQNQFRIGLSRMERVVKERMSLSEVDSITPQSLTNIRPLTAAIKEFFSSSQLS
QFMDQINPLAELTNKRRLSALGPGGLSRDRAGYEVRDVHASHYGRICPIETPEGPNIGLI
STLASYAKINQYGFIETPYRKVNNCVIDEHDVRYLTADEEKNYIIAQANVRTDKDGTILD
AQVIARHLGENIMAKREEVDYIDISPKQIVSVATSCIPFLENDDATRALMGANMQRQAVP
LLNPHTPFVGTGMEHQAARDSGAAVVSREDGIVTYVDAKKVIVEDNEGVEHRYRLSKFKI
SNNGTCINHKPIVKTGEKVLKGQVLADGPAMEQGELALGQNVLVGFMEWNGYNYEDAVIM
SERLVKDDVYTSVHIDEYAIECRDTKLGPEEITRDIPNVGDEARKNLNSDGIIMIGAEVK
EGDILVGKVTPKGQAELSAEEKLLLAIFGEKSREVKDNSLRVPHGGAGIVHDIKVFERKN
GDELQPGVNKVVKVYIVQKRKISEGDKMAGRHGNKGVISKILPIEDMPHLEDGTPLDIML
NPLGVPSRMNIGQVLELHLGYAARQLGLYIATPAFDGLHPSDLEDIMAEAGMSKDGKQPV
ISGRTGEYFDNNISVGIMYMIKLAHMVDDKLHARSVGPYSLVTQQPLGGKAQNGGQRFGE
MEVWALEAYGAAYTLREILTVKSDDVVGRVKTYEAIVKGQPLPEPGLPESFRVLKKELQA
LALDIRLLDENDNEVDMRNIEEEEHRFPRSIDKDEVIETPETEDELEEEILEDDLDVEEE
EDFEDIDEDFDEELEEIEESESL
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaacaaaataactgaagcaaaaagcaagattactcgtcgtaattattcaagaatt
agtggatctttagaacttccaaatttagtagaaattcaaacaaattcatataaatggttt
aaagaagtaggtattaaggaagtatttgaagatatctacccaattactaactttaacgaa
acattgtcgttagaattcgtagattgtacatttgatgaagcaaaatattcagtcgaagag
agcaaagaccgtgatgctaactatgctgcaccaattagagcatctttacgtttagttaat
tctggtactggtgaaattaaagaacaagaagtatttatgggagatttcccattgatgact
gactcaggaactttcatcattaacggtgctgaacgtgttatcgtatcacaattagttcgg
tctccaggggcatattttgctgatgccttagataaaagtggtaaaacagtatttaatggg
agtattatcccttcaagaggtacttggctagaatttgaaacagatgctaaggatgtttta
aacgtgcgtatcgatcgtaatagaaagatgccgggaactgtattattaagagctttaggt
ctttcaagtaacgatgaaatcatcgatgtttttggtgaacacgagtatatcatcaacact
ttagctaaagataatacaactaatactgaagaagctttaattgaaatttataataaatta
agaccaggtgaaccagcaacattagaaggtgctaacaacttattatatacgcgtttcttt
gattgtaaacgttatgatctagctaaagctggacgctttaagttcagaaaaaaattgagc
cttttagatcgtattgcgggacgtattttagcagaagatttagttgatgttgacggaaat
gtagtatacccagagggtactgtagttactcaagaagttagtgatacaattaaaccaatt
tttgaagctggagctcatacacgtgaacttgataccaaccctagattagaatcaaacggt
gtgatccaagtattagatgtttatgtagatgatactaaaactaaaaagatgcgagttatt
ggtactgatttatctttagatagtaagtttgttactatttctgatatgatggctgcttat
tcatatatgtttaacttagtagatatctatgatgcgttagatttaacagctgaagatcgt
gttaacttaatggctcggattggattattagatgatattgaccatttaggtaatcgtcgt
gttcgttctgttggtgaattaattcaaaatcaatttagaattggtttatcaagaatggaa
cgggttgtaaaagaaagaatgtcattgtctgaagttgattcaattacaccacaatcactt
actaatattcgtccgttaactgcggcaattaaggaatttttctcttcttcacaattgtct
caatttatggatcaaatcaatccccttgccgaacttactaataaacgtcgtttatcagca
ttagggcctggtggtctaagccgtgatcgtgctggttatgaagtccgtgacgtacatgcg
tctcactacggaagaatttgtccaattgaaacacctgaaggtccaaacatcgggttgatt
tcaacattagcttcttatgctaaaattaatcaatatgggtttattgaaacgccatatcgt
aaagtaaataattgtgttattgatgaacatgatgttcgttatttaactgctgatgaagaa
aaaaattatattattgcgcaagcaaatgttagaactgataaagatggtacgattctagat
gcccaagttattgctcgtcacttaggagaaaatatcatggctaagcgcgaagaagtagat
tatatcgatatttcaccaaaacaaattgtatcggttgctacttcttgtattccgttcctt
gaaaatgatgatgctactcgtgctttaatgggtgccaacatgcaacgtcaagctgtacca
ttgttaaatccacatacgccatttgttggaactgggatggagcatcaggcagctcgtgat
tcaggtgcggcagtagtatcacgtgaagatggaattgtaacatatgttgatgctaaaaaa
gtaattgttgaagataatgaaggggttgaacatcgctaccgtttatctaagtttaagatt
tcaaacaacggtacatgtattaaccacaaaccaatcgttaagactggggaaaaagtattg
aaaggtcaagttttagctgatggtccggctatggaacaaggtgaacttgctttaggacaa
aacgtattagtaggattcatggaatggaatggatataactatgaagatgcggttattatg
tctgaaagattagtgaaagatgatgtttatacatctgttcatattgatgagtatgcaatc
gaatgtcgtgatactaaattagggcctgaagaaattactcgtgacattcctaacgttggg
gatgaagctcgtaaaaacctaaatagtgacgggatcattatgattggtgctgaagttaaa
gagggtgacattctagttggtaaagtaacaccaaaaggtcaagctgagctttcggcagaa
gaaaaattattacttgcaatctttggagaaaaatctcgtgaagttaaagataattcatta
agagttcctcatggtggggctggaatcgttcatgacattaaagtatttgaaagaaaaaat
ggtgatgaattacaaccaggtgttaataaagttgttaaagtttatattgttcaaaagaga
aaaatttctgaaggggataaaatggcaggacgtcatggtaataaaggggtaatctctaaa
attttaccaattgaagatatgccacacttagaagatggaacaccattggatattatgtta
aacccattaggggtaccttctcgtatgaatatcgggcaagtacttgaattacatttaggt
tatgctgctcgtcaattaggtttatatattgcaacaccagccttcgatggtttacatcca
agtgatctagaagatatcatggctgaagcaggaatgtctaaagatggtaaacaacctgtt
atttctggtcgtactggtgaatattttgataataatatctcagttggaatcatgtatatg
attaaattagcccacatggttgatgataaattacatgctcgttcagttggtccatactca
ctagttacgcaacaaccattaggtggtaaagcacaaaatggtggacaaagatttggggaa
atggaagtttgggcacttgaagcatatggtgctgcatatacattacgtgaaatattaaca
gtaaaatctgacgatgttgttggtcgtgttaagacttatgaagcaattgttaaaggacaa
ccattaccagaaccaggattacctgaatcatttagagtgttaaagaaagaattgcaagct
cttgcattagatattcgtctattagatgaaaatgataatgaagtagatatgcgtaatatc
gaagaagaggaacatcgtttccctcgtagtatcgataaagatgaagtgattgaaactcct
gaaacagaagatgaattagaagaagaaattcttgaggatgatttagatgttgaagaagag
gaagatttcgaagatatcgacgaagattttgatgaagaattagaagaaatcgaagaaagt
gaatcattatag
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